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Report for CCDS22882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22882.1 Public Mus musculus 9 Pin1 23 108 98 CCDS HistoryNCBI Gene:23988Re-query CCDS DB by CCDS ID:22882.1Re-query CCDS DB by GeneID:23988See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22882.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034689.7 ENSMUSP00000034689.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034689.7Link to Ensembl Protein Viewer:ENSMUSP00000034689.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034689Re-query CCDS DB by Protein ID:ENSMUSP00000034689
Original member Current member NCBI NM_023371.4 NP_075860.1 Accepted alive Link to Nucleotide Sequence:NM_023371.4Link to Protein Sequence:NP_075860.1Re-query CCDS DB by Nucleotide ID:NM_023371Re-query CCDS DB by Protein ID:NP_075860Link to BLAST:NP_075860.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075860.1 165 Q9QUR7 165 100% 0 0

Chromosomal Locations for CCDS 22882.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 20652140 20652197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20655362 20655580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20662298 20662408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20663175 20663284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGGCGGACGAGGAGAAGCTGCCACCAGGCTGGGAGAAGCGTATGAGTCGCAGCTCAGGCCGGGTGTACT
ACTTCAATCACATCACCAACGCCAGCCAGTGGGAGCGGCCCAGCGGCGGCAGCACTGTTGGAGGCAGCAG
CAAGAATGGCCAGGGTGAGCCTGCCAAGGTGCGCTGCTCACATCTGCTGGTGAAGCACAGCCAGTCTCGG
AGGCCCTCATCCTGGCGGCAGGAAAAGATCACCAGGAGCAAGGAGGAGGCCCTGGAGCTCATCAATGGCT
ATATCCAGAAGATTAAGTCAGGAGAGGAAGACTTTGAATCTCTGGCCTCACAGTTCAGTGATTGCAGCTC
TGCCAAAGCCAGGGGAGACCTGGGTCCCTTCAGCAGAGGTCAGATGCAGAAACCATTTGAGGATGCGTCG
TTTGCTCTACGGACAGGGGAGATGAGTGGGCCCGTGTTCACGGACTCGGGCATCCATATCATCCTGCGCA
CAGAATGA

Translation (165 aa):
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGGSTVGGSSKNGQGEPAKVRCSHLLVKHSQSR
RPSSWRQEKITRSKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGPFSRGQMQKPFEDAS
FALRTGEMSGPVFTDSGIHIILRTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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