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Report for CCDS90509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90509.1 Public Mus musculus 9 Icam4 23 108 98 CCDS HistoryNCBI Gene:78369Re-query CCDS DB by CCDS ID:90509.1Re-query CCDS DB by GeneID:78369See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90509.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000215077.1 ENSMUSP00000151013.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215077.1Link to Ensembl Protein Viewer:ENSMUSP00000151013.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215077Re-query CCDS DB by Protein ID:ENSMUSP00000151013
Original member Current member NCBI NM_001364509.1 NP_001351438.1 Accepted alive Link to Nucleotide Sequence:NM_001364509.1Link to Protein Sequence:NP_001351438.1Re-query CCDS DB by Nucleotide ID:NM_001364509Re-query CCDS DB by Protein ID:NP_001351438Link to BLAST:NP_001351438.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351438.1 262 Q9ERM2-2 262 100% 0 0

Chromosomal Locations for CCDS 90509.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21029454 21029823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21029937 21030355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGGAGTCTGCCCTTCTGCTCCCGTCGCTTTTGCTGGTGGCTGCCTATCCGAGGGGTGGGAGCCCCCAGC
AAGAGTGGATGCAAAGTCCTCCCGCGCCTTCCGTGACCTCAGCACCTTTCTGGGTGCGTCTTAATCCAGA
GCTAGAGGCCGTGCCTCCCGGGGGCTCAGCGTGGCTTAACTGCAGCCACAACTGCCCCCTGCCGGTGCAT
TCCAGCCTGCGCACCCAACTGCGGCAGGGAAAGATAGTTAATGGATCCGGCTGGGTATCTTACCAGCTAC
TGGATGTGAGGGCCTGGAATTCCAAGGTGCGCTGCGTCGTCACTTGCGCAGGAGAAACCCGAGAGGCCAC
CGCCAGGATCACTGCTTACAAACGGCCCAGAAGCGTGATCTTGGAGCCTCCGGTCCTAGTGGGCCACAAG
TACACTCTGCGATGCTATGTGACACACGTGTTCCCAGTGGGATTCTTGGTGGTGAGCCTGAGAAGAGGTG
GCCGAGTGATTTATCATGAAAGCCTGGAGCGCTTCACCGGTTCAGATTTGGCTAATGTCACTTTGACCTA
CGTGATGCGGGCCGGACTCAACGACCTCTGGCAGCCACTCACCTGCCATGCGCGCCTCAATCTCGACGGG
CTAGTGGTGCGCAGCAGCTCGGCACCTGTTATGTTGACAGTCCTCGGTGAGGCATCCTGTAATCCCAGGG
AATGGGTGCGGGAGAGGGGATGTTGCCACTCCAAGGGGGCCTGCAGAACAGGCGTGGGCTCCACGCTTGG
CGGTCCTCAGACCTCCTAG

Translation (262 aa):
MESALLLPSLLLVAAYPRGGSPQQEWMQSPPAPSVTSAPFWVRLNPELEAVPPGGSAWLNCSHNCPLPVH
SSLRTQLRQGKIVNGSGWVSYQLLDVRAWNSKVRCVVTCAGETREATARITAYKRPRSVILEPPVLVGHK
YTLRCYVTHVFPVGFLVVSLRRGGRVIYHESLERFTGSDLANVTLTYVMRAGLNDLWQPLTCHARLNLDG
LVVRSSSAPVMLTVLGEASCNPREWVRERGCCHSKGACRTGVGSTLGGPQTS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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