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Report for CCDS13024.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13024.2 Public Homo sapiens 20 STK35 24 110 108 CCDS HistoryNCBI Gene:140901Re-query CCDS DB by CCDS ID:13024.2See the combined annotation on chromosome 20 in Sequence Viewer

Public Note for CCDS 13024.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data, homology with mouse NP_899085.3 and the publication, PMID:19756140.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13024.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381482.8 ENSP00000370891.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381482.8Link to Ensembl Protein Viewer:ENSP00000370891.3Re-query CCDS DB by Nucleotide ID:ENST00000381482Re-query CCDS DB by Protein ID:ENSP00000370891
Original member Current member NCBI NM_080836.4 NP_543026.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080836.4Link to Protein Sequence:NP_543026.2Re-query CCDS DB by Nucleotide ID:NM_080836Re-query CCDS DB by Protein ID:NP_543026Link to BLAST:NP_543026.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543026.2 534 Q8TDR2 534 100% 0 0

Chromosomal Locations for CCDS 13024.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 2101882 2102175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2102768 2103365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2116666 2117378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGGGCCACCAGGAGTCTCCGCTGGCCCGGGCGCCGGCGGGAGGTGCAGCTTATGTAAAGAGGTTATGTA
AAGGGCTCAGCTGGCGCGAACACGTGGAAAGCCACGGGAGCCTAGGAGCCCAGGCTTCCCCAGCGAGCGC
CGCGGCAGCAGAAGGATCCGCTACACGCCGGGCTCGGGCCGCCACCTCCCGCGCTGCTCGGTCCCGGAGG
CAGCCCGGGCCCGGAGCGGACCATCCCCAGGCAGGGGCTCCAGGGGGGAAACGGGCCGCCCGGAAGTGGA
GGTGCGCGGGCCAGGTCACAATCCAAGGTCCGGCTCCTCCGCGTCCCAGGGCCGGACGGAGGGATGAGGC
AGGGGGGGCCCGGGCAGCGCCGTTGCTGCTCCCCCCGCCGCCCGCAGCCATGGAAACGGGGAAGGACGGC
GCCCGCAGAGGTACACAAAGCCCGGAGCGGAAAAGGCGAAGCCCAGTGCCGCGGGCGCCCAGCACGAAGC
TGAGGCCGGCGGCGGCGGCCCGGGCCATGGATCCGGTGGCGGCCGAGGCCCCGGGCGAGGCCTTCCTGGC
GCGGCGACGGCCTGAGGGCGGTGGCGGGTCCGCGCGGCCGCGTTACAGCCTGTTGGCGGAGATCGGGCGC
GGCAGCTACGGCGTGGTTTATGAGGCAGTGGCCGGGCGCAGCGGGGCCCGGGTGGCGGTCAAGAAGATCC
GCTGCGACGCCCCCGAGAACGTGGAGCTGGCGCTGGCTGAATTCTGGGCCCTCACCAGCCTCAAGCGGCG
CCACCAGAACGTCGTGCAGTTTGAGGAGTGCGTCCTGCAGCGCAATGGGTTAGCCCAGCGCATGAGTCAC
GGCAACAAGAGCTCGCAGCTTTACCTGCGCCTGGTGGAGACCTCGCTGAAAGGAGAAAGGATCCTGGGTT
ATGCTGAGGAGCCCTGCTATCTCTGGTTTGTCATGGAGTTCTGTGAAGGTGGAGACCTGAATCAGTATGT
CCTGTCCCGGAGGCCAGACCCAGCCACCAACAAAAGTTTCATGCTACAGCTGACGAGCGCCATTGCCTTC
CTGCACAAAAACCATATTGTGCACAGGGACCTGAAGCCAGACAACATCCTCATCACAGAGCGGTCTGGCA
CCCCCATCCTCAAAGTGGCCGACTTTGGACTAAGCAAGGTCTGTGCTGGGCTGGCACCCCGAGGCAAAGA
GGGCAATCAAGACAACAAAAATGTGAATGTGAATAAGTACTGGCTGTCCTCAGCCTGCGGTTCGGACTTC
TACATGGCTCCTGAAGTCTGGGAGGGACACTACACAGCCAAGGCGGACATCTTTGCCCTGGGCATTATCA
TCTGGGCAATGATAGAAAGAATCACTTTTATTGACTCTGAGACCAAGAAGGAGCTCCTGGGGACCTACAT
TAAACAGGGGACTGAGATCGTCCCTGTTGGTGAGGCGCTGCTAGAAAACCCAAAGATGGAGTTGCACATC
CCCCAAAAACGCAGGACTTCCATGTCTGAGGGGATCAAGCAGCTCTTGAAAGATATGTTAGCTGCTAACC
CACAGGACCGGCCTGATGCCTTTGAACTTGAAACCAGAATGGACCAGGTCACATGTGCTGCTTAA

Translation (534 aa):
MGHQESPLARAPAGGAAYVKRLCKGLSWREHVESHGSLGAQASPASAAAAEGSATRRARAATSRAARSRR
QPGPGADHPQAGAPGGKRAARKWRCAGQVTIQGPAPPRPRAGRRDEAGGARAAPLLLPPPPAAMETGKDG
ARRGTQSPERKRRSPVPRAPSTKLRPAAAARAMDPVAAEAPGEAFLARRRPEGGGGSARPRYSLLAEIGR
GSYGVVYEAVAGRSGARVAVKKIRCDAPENVELALAEFWALTSLKRRHQNVVQFEECVLQRNGLAQRMSH
GNKSSQLYLRLVETSLKGERILGYAEEPCYLWFVMEFCEGGDLNQYVLSRRPDPATNKSFMLQLTSAIAF
LHKNHIVHRDLKPDNILITERSGTPILKVADFGLSKVCAGLAPRGKEGNQDNKNVNVNKYWLSSACGSDF
YMAPEVWEGHYTAKADIFALGIIIWAMIERITFIDSETKKELLGTYIKQGTEIVPVGEALLENPKMELHI
PQKRRTSMSEGIKQLLKDMLAANPQDRPDAFELETRMDQVTCAA


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