NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19172.1 Public Mus musculus 5 Dnajc5g 23 108 98 CCDS HistoryNCBI Gene:231098Re-query CCDS DB by CCDS ID:19172.1Re-query CCDS DB by GeneID:231098See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066544.4 ENSMUSP00000064587.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066544.4Link to Ensembl Protein Viewer:ENSMUSP00000064587.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000066544Re-query CCDS DB by Protein ID:ENSMUSP00000064587
Original member Current member NCBI NM_177677.3 NP_808345.1 Accepted alive Link to Nucleotide Sequence:NM_177677.3Link to Protein Sequence:NP_808345.1Re-query CCDS DB by Nucleotide ID:NM_177677Re-query CCDS DB by Protein ID:NP_808345Link to BLAST:NP_808345.1

Chromosomal Locations for CCDS 19172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31108890 31109002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31109495 31109708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31110178 31110319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31111113 31111141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGCCTCTTACGTATGACGCAACCCAGCGACTATCTAGAACTGGGAAAAGCCTCTATGCAGTGCTGGAAC
TGAAGAAGGGTGCTGAGACTGCAGACATCAAAAAAGCCTACAGGAAACTGGCCTTGCAATATCATCCAGA
CAAGAATCCAGATAACCCTTTAGCAGCAGAAATCTTCAAAGAGATCAACACAGCCCATGCCATACTCACC
GACCCTACAAAAAAGAAGATCTATGACCGGCACGGCTCACTAGGATTATACCTGTATGACCATTTTGGTG
AAGAAGGTGTCCGATTCTATTTTATAGTGAACAGTTGTTGGTTCAAGACACTTGTTATCCTTTGTTGCTT
GCTCACTGGTTGTTGTTGTTGCTGCTGCTGCTGTTTATGCTGTGGTAGACTTAATCCATCAGCCGAGGAA
GAGGAAGAGAATCGCCAAATGAATGTTTCTTCTCAGCCTTCAAGATCAAGAACACAAGATATTGAAGCAG
AGGATTAA

Translation (165 aa):
MPLTYDATQRLSRTGKSLYAVLELKKGAETADIKKAYRKLALQYHPDKNPDNPLAAEIFKEINTAHAILT
DPTKKKIYDRHGSLGLYLYDHFGEEGVRFYFIVNSCWFKTLVILCCLLTGCCCCCCCCLCCGRLNPSAEE
EEENRQMNVSSQPSRSRTQDIEAED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH