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Report for CCDS35003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35003.1 Public Homo sapiens 9 TAF1L 24 110 108 CCDS HistoryNCBI Gene:138474Re-query CCDS DB by CCDS ID:35003.1Re-query CCDS DB by GeneID:138474See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35003.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000242310.4 ENSP00000418379.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000242310.4Link to Ensembl Protein Viewer:ENSP00000418379.1Re-query CCDS DB by Nucleotide ID:ENST00000242310Re-query CCDS DB by Protein ID:ENSP00000418379
Original member Current member NCBI NM_153809.2 NP_722516.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153809.2Link to Protein Sequence:NP_722516.1Re-query CCDS DB by Nucleotide ID:NM_153809Re-query CCDS DB by Protein ID:NP_722516Link to BLAST:NP_722516.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722516.1 1826 Q8IZX4 1826 100% 0 0

Chromosomal Locations for CCDS 35003.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 32630099 32635579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5481 nt):
ATGCGACCCGGCTGCGATTTGCTGCTGAGGGCAGCAGCTACCGTCACTGCCGCCATCATGTCAGACTCGG
ACAGCGAGGAAGATTCATCTGGAGGTGGCCCATTTACTTTAGCGGGTATCCTTTTCGGCAACATCAGTGG
AGCGGGGCAGCTGGAGGGGGAAAGCGTCTTGGATGATGAGTGTAAGAAGCACTTGGCAGGCTTGGGGGCT
TTGGGGCTGGGCAGCCTAATCACTGAACTCACGGCAAATGAAGAATTGACTGGGACTGGCGGTGCCTTGG
TAAATGATGAAGGGTGGATTAGGAGTACAGAAGATGCTGTAGACTATTCAGACATCAATGAGGTGGCAGA
AGATGAAAGCCAAAGACACCAGCAGACGATGGGGAGCTTGCAGCCCCTTTACCACTCGGATTATGATGAA
GATGACTATGATGCTGATTGTGAAGACATTGATTGCAAGTTGATGCCTCCTCCACCTCCACCCCCGGGAC
CAATGAAGAAGGATAAGGACCAAGATGCTATTACCTGTGTGTCTGAAAGTGGAGAAGACATCATCTTGCC
CTCCATCATTGCCCCTTCCTTTTTGGCCTCAGAGAAAGTGGATTTCAGTAGTTACTCTGATTCAGAATCT
GAGATGGGACCTCAGGAAGCAACACAGGCAGAATCTGAGGATGGAAAGCTGACCCTTCCATTGGCTGGGA
TTATGCAGCATGATGCCACCAAGCTGTTGCCAAGTGTCACCGAACTTTTTCCAGAATTTCGACCTGGAAA
AGTGTTACGCTTCCTACATCTTTTTGGACCAGGGAAGAATGTCCCATCTGTTTGGCGGAGTGCTCGGAGA
AAGAGGAAGAAGCATCGTGAGCTGATACAGGAAGAGCAGATCCAGGAGGTGGAATGCTCAGTAGAATCAG
AAGTCAGCCAGAAGTCTTTGTGGAACTATGACTATGCTCCACCACCACCCCCAGAGCAGTGTCTCGCTGA
TGATGAAATCACGATGATGGTTCCTGTGGAGTCCAAATTTTCCCAATCAACTGGAGATGTAGATAAAGTG
ACAGATACCAAACCAAGAGTGGCTGAGTGGCGTTATGGGCCTGCCCGACTGTGGTATGATATGCTGGGTG
TCTCCGAAGATGGCAGTGGGTTTGACTATGGCTTCAAACTGAGAAAGACACAACATGAACCTGTGATAAA
ATCTAGAATGATGGAGGAATTTAGGAAACTTGAGGAAAGCAATGGCACTGATCTTCTGGCTGACGAAAAC
TTCCTGATGGTGACACAGCTGCATTGGGAGGATTCTATCATCTGGGATGGGGAGGATATCAAACACAAAG
GGACAAAACCTCAGGGTGCAAGCCTGGCAGGCTGGCTTCCTTCTATTAAGACTAGGAATGTAATGGCTTA
CAATGTTCAGCAAGGTTTTGCACCCACTCTGGATGATGACAAACCTTGGTACTCCATTTTTCCCATTGAC
AATGAGGATCTGGTGTATGGACGCTGGGAGGACAATATCATTTGGGATGCTCAGGCCATGCCCCGGCTGT
TGGAACCTCCTGTTTTGGCACTTGATCCCAATGATGAGAACCTCATTTTGGAAATTCCTGATGAGAAGGA
AGAGGCCACCTCTAACTCCCCCTCCAAGGAGAGTAAGAAGGAATCATCTCTGAAGAAGAGTCGAATTCTC
TTGGGCAAAACAGGTGTCATCAGGGAGGAACCACAGCAGAACATGTCTCAGCCAGAAGTGAAAGATCCAT
GGAATCTCTCCAATGATGAGTATTATTTCCCCAAGCAACAGGGTCTTCGGGGCACCTTTGGAGGGAATAT
TATCCAGCATTCAATTCCTGCTATGGAATTATGGCAGCCCTTCTTTCCCACCCACATGGGGCCCATCAAA
ATCCGGCAGTTCCATCGCCCACCTCTGAAAAAGTACTCATTTGGTGCACTCTCTCAGCCAGGTCCCCATT
CAGTCCAACCTTTGCTAAAGCACATCAAAAAAAAGGCCAAGATGAGAGAACAAGAGAGGCAAGCCTCAGG
TGGTGGAGAGTTGTTTTTTATGCGCACACCTCAGGATCTCACAGGCAAAGATGGAGATCTTATTCTTGCA
GAATATAGTGAGGAAAATGGACCCTTAATGATGCAGGTTGGCATGGCAACCAAGATAAAGAACTATTATA
AACGGAAACCTGGCAAAGATCCTGGAGCACCAGATTGTAAATATGGGGAAACTGTTTACTGCCATACATC
TCCTTTCTTGGGCTCTCTCCATCCTGGCCAATTACTGCAGGCACTTGAGAACAACCTTTTTCGTGCTCCA
GTGTATCTTCATAAGATGCCAGAAACTGATTTTCTGATCATTCGGACAAGACAGGGTTACTATATTCGGG
AATTAGTGGATATTTTTGTGGTTGGCCAGCAGTGTCCCTTGTTTGAAGTTCCTGGGCCTAACTCCAGAAG
GGCCAATATGCATATTCGAGACTTTCTACAGGTTTTTATTTACCGCCTTTTCTGGAAGAGTAAAGATCGG
CCACGGAGGATACGAATGGAAGATATAAAAAAAGCCTTTCCTTCCCATTCAGAAAGCAGCATCCGGAAGA
GGCTAAAGCTCTGCGCTGACTTCAAACGCACAGGGATGGATTCAAACTGGTGGGTGCTTAAGTCTGATTT
TCGTTTACCAACGGAAGAAGAGATCAGAGCTAAGGTGTCACCAGAGCAGTGCTGTGCTTATTATAGCATG
ATAGCTGCAAAGCAACGACTGAAGGATGCTGGCTATGGTGAGAAATCCTTTTTTGCCCCAGAAGAAGAAA
ATGAGGAAGATTTCCAGATGAAGATTGATGATGAAGTTCACGCTGCTCCTTGGAACACCACAAGGGCCTT
CATTGCTGCCATGAAGGGCAAGTGTCTCCTAGAGGTGACTGGGGTGGCAGATCCCACAGGGTGTGGTGAA
GGATTCTCCTATGTGAAGATTCCAAATAAACCAACACAGCAGAAGGATGATAAAGAGCCACAGGCAGTGA
AGAAGACAGTGACAGGAACAGATGCAGACCTTCGTCGCCTTTCCCTGAAAAATGCCAAGCAACTTCTACG
TAAATTTGGTGTGCCTGAGGAAGAGATTAAAAAGTTGTCCCGCTGGGAAGTGATTGATGTGGTGCGCACA
ATGTCAACAGAACAGGCTCATTCTGGAGAGGGGCCCATGAGTAAATTTGCCCGTGGATCAAGGTTTTCTG
TGGCTGAGCATCAAGAGCGTTACAAAGAGGAATGTCAGCGTATCTTTGACCTACAGAACAAGGTTCTGTC
ATCAACTGAGGTCTTATCAACTGACACAGACAGCATCTCAGCTGAAGATAGTGACTTTGAAGAAATGGGA
AAGAACATTGAGAACATGTTGCAGAACAAGAAAACCAGCTCTCAGCTGTCACGTGAATGGGAGGAGCAGG
AGCGGAAGGAACTACGGCGAATGCTACTGGTAGCAGGCTCAGCAGCATCAGGAAACAATCACAGAGATGA
TGTCACAGCTTCCATGACTAGCCTTAAGTCTTCTGCCACTGGACACTGTCTCAAGATTTATCGCACATTT
CGAGATGAAGAGGGGAAAGAGTATGTTCGCTGTGAGACAGTCCGAAAACCAGCTGTCATTGATGCCTATG
TGCGCATACGGACTACAAAAGATGAGAAATTCATTCAAAAATTTGCCCTTTTTGATGAAAAACATCGGGA
AGAGATGCGGAAAGAACGGCGGAGGATTCAAGAGCAACTGAGGCGGCTTAAGCGGAACCAGGAAAAGGAG
AAGCTTAAGGGTCCTCCTGAGAAGAAGCCCAAGAAAATGAAAGAGCGTCCTGACCTAAAACTGAAATGTG
GGGCATGTGGTGCCATTGGACATATGAGGACTAACAAATTCTGCCCCCTCTATTATCAAACAAATGTGCC
ACCTTCGAAACCTGTTGCCATGACAGAAGAGCAGGAGGAGGAGTTGGAAAAGACAGTCATTCATAATGAT
AATGAAGAACTTATCAAGGTTGAAGGGACCAAAATTGTCTTCGGGAAACAGCTAATTGAGAATGTGCATG
AGGTTCGCAGAAAATCTCTGGTTCTCAAGTTTCCTAAACAGCAGCTTCCTCCAAAGAAGAAACGGCGAGT
TGGAACCACTGTTCATTGTGACTATTTGAATATACCTCATAAGTCCATCCACCGACGCCGCACAGACCCT
ATGGTGACGCTGTCATCCATCCTGGAGTCTATCATCAATGACATGAGAGATCTTCCAAATACACACCCTT
TCCACACTCCAGTCAATGCAAAGGTTGTAAAGGACTACTACAAAATCATCACTCGGCCAATGGACCTACA
AACACTCCGTGAAAATGTGCGTAAATGCCTCTACCCATCTCGGGAAGAGTTCAGAGAGCATCTGGAGCTA
ATTGTGAAAAACAGTGCGACCTACAATGGGCCAAAACATTCATTGACTCAGATCTCTCAATCCATGCTGG
ATCTCTGTGATGAAAAACTTAAAGAGAAAGAAGACAAATTAGCTCGCTTAGAGAAAGCTATCAACCCCTT
GCTGGATGATGATGACCAAGTGGCATTTTCTTTCATTCTGGACAACATTGTCACCCAGAAAATGATGGCA
GTTCCAGATTCTTGGCCATTTCATCACCCAGTTAATAAGAAGTTTGTTCCAGATTATTACAAAATGATTG
TCAATCCAGTGGATTTAGAGACCATACGTAAGAACATCTCCAAGCACAAGTATCAGAGTCGGGAGAGTTT
TCTAGATGATGTAAACCTTATTCTTGCCAACAGTGTTAAGTATAATGGACCTGAGAGTCAGTACACTAAG
ACTGCTCAGGAGATTGTGAACATCTGTTACCAGACAATTACTGAGTATGATGAGCATTTGACTCAACTTG
AGAAGGATATTTGTACAGCTAAAGAAGCAGCTTTGGAGGAAGCAGAATTAGAAAGCCTGGACCCAATGAC
CCCAGGGCCCTACACATCTCAGCCTCCTGATATGTATGATACCAACACATCCCTCAGTACGTCTCGAGAT
GCCTCTGTATTTCAAGATGAGAGCAATTTGTCTGTCTTGGATATTTCCACTGCCACTCCAGAAAAACAGA
TGTGCCAGGGCCAAGGTAGGCTGGGTGAGGAAGACTCTGATGTGGATGTTGAAGGGTATGATGATGAGGA
GGAGGATGGGAAACCTAAGCCTCCAGCCCCAGAAGGGGGAGATGGTGATCTTGCAGATGAAGAGGAAGGA
ACTGTACAACAACCTGAAGCCAGTGTCCTGTATGAGGATTTGCTTATATCTGAAGGAGAAGATGATGAGG
AAGATGCTGGGAGTGACGAAGAAGGAGACAATCCTTTCTCTGCTATCCAGCTGAGTGAAAGTGGAAGTGA
CTCTGATGTGGGATATGGTGGAATAAGACCCAAACAACCCTTCATGCTTCAGCATGCTTCAGGAGAACAC
AAGGATGGGCACGGAAAATGA

Translation (1826 aa):
MRPGCDLLLRAAATVTAAIMSDSDSEEDSSGGGPFTLAGILFGNISGAGQLEGESVLDDECKKHLAGLGA
LGLGSLITELTANEELTGTGGALVNDEGWIRSTEDAVDYSDINEVAEDESQRHQQTMGSLQPLYHSDYDE
DDYDADCEDIDCKLMPPPPPPPGPMKKDKDQDAITCVSESGEDIILPSIIAPSFLASEKVDFSSYSDSES
EMGPQEATQAESEDGKLTLPLAGIMQHDATKLLPSVTELFPEFRPGKVLRFLHLFGPGKNVPSVWRSARR
KRKKHRELIQEEQIQEVECSVESEVSQKSLWNYDYAPPPPPEQCLADDEITMMVPVESKFSQSTGDVDKV
TDTKPRVAEWRYGPARLWYDMLGVSEDGSGFDYGFKLRKTQHEPVIKSRMMEEFRKLEESNGTDLLADEN
FLMVTQLHWEDSIIWDGEDIKHKGTKPQGASLAGWLPSIKTRNVMAYNVQQGFAPTLDDDKPWYSIFPID
NEDLVYGRWEDNIIWDAQAMPRLLEPPVLALDPNDENLILEIPDEKEEATSNSPSKESKKESSLKKSRIL
LGKTGVIREEPQQNMSQPEVKDPWNLSNDEYYFPKQQGLRGTFGGNIIQHSIPAMELWQPFFPTHMGPIK
IRQFHRPPLKKYSFGALSQPGPHSVQPLLKHIKKKAKMREQERQASGGGELFFMRTPQDLTGKDGDLILA
EYSEENGPLMMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQALENNLFRAP
VYLHKMPETDFLIIRTRQGYYIRELVDIFVVGQQCPLFEVPGPNSRRANMHIRDFLQVFIYRLFWKSKDR
PRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAKVSPEQCCAYYSM
IAAKQRLKDAGYGEKSFFAPEEENEEDFQMKIDDEVHAAPWNTTRAFIAAMKGKCLLEVTGVADPTGCGE
GFSYVKIPNKPTQQKDDKEPQAVKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVIDVVRT
MSTEQAHSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLSSTEVLSTDTDSISAEDSDFEEMG
KNIENMLQNKKTSSQLSREWEEQERKELRRMLLVAGSAASGNNHRDDVTASMTSLKSSATGHCLKIYRTF
RDEEGKEYVRCETVRKPAVIDAYVRIRTTKDEKFIQKFALFDEKHREEMRKERRRIQEQLRRLKRNQEKE
KLKGPPEKKPKKMKERPDLKLKCGACGAIGHMRTNKFCPLYYQTNVPPSKPVAMTEEQEEELEKTVIHND
NEELIKVEGTKIVFGKQLIENVHEVRRKSLVLKFPKQQLPPKKKRRVGTTVHCDYLNIPHKSIHRRRTDP
MVTLSSILESIINDMRDLPNTHPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKCLYPSREEFREHLEL
IVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMA
VPDSWPFHHPVNKKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTK
TAQEIVNICYQTITEYDEHLTQLEKDICTAKEAALEEAELESLDPMTPGPYTSQPPDMYDTNTSLSTSRD
ASVFQDESNLSVLDISTATPEKQMCQGQGRLGEEDSDVDVEGYDDEEEDGKPKPPAPEGGDGDLADEEEG
TVQQPEASVLYEDLLISEGEDDEEDAGSDEEGDNPFSAIQLSESGSDSDVGYGGIRPKQPFMLQHASGEH
KDGHGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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