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Report for CCDS49459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49459.1 Public Mus musculus 14 1700001F09Rik 23 108 98 CCDS HistoryNCBI Gene:71826Re-query CCDS DB by CCDS ID:49459.1Re-query CCDS DB by GeneID:71826See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49459.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178178.1 ENSMUSP00000136772.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178178.1Link to Ensembl Protein Viewer:ENSMUSP00000136772.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178178Re-query CCDS DB by Protein ID:ENSMUSP00000136772
Original member Current member NCBI NM_027940.2 NP_082216.1 Accepted alive Link to Nucleotide Sequence:NM_027940.2Link to Protein Sequence:NP_082216.1Re-query CCDS DB by Nucleotide ID:NM_027940Re-query CCDS DB by Protein ID:NP_082216Link to BLAST:NP_082216.1

Chromosomal Locations for CCDS 49459.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 43342667 43342731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 43344504 43344688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 43345349 43345480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 43346634 43346790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 43347751 43347766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGGGTTCCCAAGCAGGGTCATTTAGGAAGGCATCACCCCAAACTCCCAACATCGATGAGAACGAGAAAA
GAATCAAGAGGTTGGAGAAGCTCAAAAGAGATCTCCAGAACATTAAAAATGAGAGAGACATTCTCCAGGG
AATCCTGGCCAAGTACAAGGATTTGAATGACAGGACCAACTTTGAGACATTCATGCTTGAGATGCAACAT
AACCAGATGATGACTGACCTGAAGAGAATGTCCCAGGACATCAGTGAGGCCTTGTACAAGTGCCAGCATT
TGACTAAAGAAAATCAATTATACTGCTGCAGGAACTGCCACCTCCTGATTGAATCTAACCTCATCCAGCA
CAAAGTCAGGATGTTGTGGAAGGAGAACAGACAGCTGCTAAGGAAGCAGATTGCATTGGAAGAATGCAAC
ATAAAAACAAAAATACTATGTAAAGAAGGCAGCCAGAAGATCAAAGACGAATATAGCAGGCAAGCAGCAG
GAAAACAAATAATTGTGGTACCTGGAAGTAAAGAAGAGGCTGCTATGTCAAATCCATGTGCCTGA

Translation (184 aa):
MGSQAGSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQH
NQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECN
IKTKILCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAAMSNPCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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