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Report for CCDS18051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18051.1 Public Mus musculus 4 B4galt1 23 108 98 CCDS HistoryNCBI Gene:14595Re-query CCDS DB by CCDS ID:18051.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18051.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030121.12 ENSMUSP00000030121.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030121.12Link to Ensembl Protein Viewer:ENSMUSP00000030121.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030121Re-query CCDS DB by Protein ID:ENSMUSP00000030121
Original member NCBI NM_022305.4 NP_071641.1 Updated not alive Link to Nucleotide Sequence:NM_022305.4Link to Protein Sequence:NP_071641.1Re-query CCDS DB by Nucleotide ID:NM_022305Re-query CCDS DB by Protein ID:NP_071641
NCBI NM_022305.5 NP_071641.1 Updated not alive Link to Nucleotide Sequence:NM_022305.5Link to Protein Sequence:NP_071641.1Re-query CCDS DB by Nucleotide ID:NM_022305Re-query CCDS DB by Protein ID:NP_071641
Current member NCBI NM_022305.6 NP_071641.1 Accepted alive Link to Nucleotide Sequence:NM_022305.6Link to Protein Sequence:NP_071641.1Re-query CCDS DB by Nucleotide ID:NM_022305Re-query CCDS DB by Protein ID:NP_071641Link to BLAST:NP_071641.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071641.1 399 P15535-1 399 100% 0 0

Chromosomal Locations for CCDS 18051.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40807185 40807317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40807733 40807837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40809679 40809801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40812685 40812872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40823439 40823674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40853391 40853805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGAGGTTTCGTGAGCAGTTCCTGGGCGGCAGCGCCGCGATGCCGGGCGCGACCCTGCAGCGGGCCTGCC
GCCTGCTCGTGGCCGTCTGCGCGCTGCACCTCGGCGTCACCCTCGTCTATTACCTCTCTGGCCGCGATCT
GAGCCGCCTGCCCCAGTTGGTCGGAGTCTCCTCTACACTGCAGGGCGGCACGAACGGCGCCGCAGCCAGC
AAGCAGCCCCCAGGAGAGCAGCGGCCGCGGGGTGCGCGGCCGCCGCCTCCTTTAGGCGTCTCCCCGAAGC
CTCGCCCGGGTCTCGACTCCAGCCCTGGTGCAGCTTCTGGCCCCGGCTTGAAGAGCAACTTGTCTTCGTT
GCCAGTGCCCACCACCACTGGACTGTTGTCGCTGCCAGCTTGCCCTGAGGAGTCCCCGCTGCTCGTTGGC
CCCATGCTGATTGACTTTAATATTGCTGTGGATCTGGAGCTTTTGGCAAAGAAGAACCCAGAGATAAAGA
CGGGCGGCCGTTACTCCCCCAAGGACTGTGTCTCTCCTCACAAGGTGGCCATCATCATCCCATTCCGTAA
CCGGCAGGAGCATCTCAAATACTGGCTGTATTATTTGCATCCCATCCTTCAGCGCCAGCAACTCGACTAT
GGCATCTACGTCATCAATCAGGCTGGAGACACCATGTTCAATCGAGCTAAGCTGCTCAATATTGGCTTTC
AAGAGGCCTTGAAGGACTATGATTACAACTGCTTTGTGTTCAGTGATGTGGACCTCATTCCGATGGACGA
CCGTAATGCCTACAGGTGTTTTTCGCAGCCACGGCACATTTCTGTTGCAATGGACAAGTTCGGGTTTAGC
CTGCCATATGTTCAGTATTTTGGAGGTGTCTCTGCTCTCAGTAAACAACAGTTTCTTGCCATCAATGGAT
TCCCTAATAATTATTGGGGTTGGGGAGGAGAAGATGACGACATTTTTAACAGATTAGTTCATAAAGGCAT
GTCTATATCACGTCCAAATGCTGTAGTAGGGAGGTGTCGAATGATCCGGCATTCAAGAGACAAGAAAAAT
GAGCCCAATCCTCAGAGGTTTGACCGGATCGCACATACAAAGGAAACGATGCGCTTCGATGGTTTGAACT
CACTTACCTACAAGGTGTTGGATGTACAGAGATACCCGTTATATACCCAAATCACAGTGGACATCGGGAC
ACCGAGATAG

Translation (399 aa):
MRFREQFLGGSAAMPGATLQRACRLLVAVCALHLGVTLVYYLSGRDLSRLPQLVGVSSTLQGGTNGAAAS
KQPPGEQRPRGARPPPPLGVSPKPRPGLDSSPGAASGPGLKSNLSSLPVPTTTGLLSLPACPEESPLLVG
PMLIDFNIAVDLELLAKKNPEIKTGGRYSPKDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDY
GIYVINQAGDTMFNRAKLLNIGFQEALKDYDYNCFVFSDVDLIPMDDRNAYRCFSQPRHISVAMDKFGFS
LPYVQYFGGVSALSKQQFLAINGFPNNYWGWGGEDDDIFNRLVHKGMSISRPNAVVGRCRMIRHSRDKKN
EPNPQRFDRIAHTKETMRFDGLNSLTYKVLDVQRYPLYTQITVDIGTPR


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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