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Report for CCDS17353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17353.1 Public Mus musculus 3 Alg5 23 108 98 CCDS HistoryNCBI Gene:66248Re-query CCDS DB by CCDS ID:17353.1Re-query CCDS DB by GeneID:66248See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17353.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044567.3 ENSMUSP00000035879.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044567.3Link to Ensembl Protein Viewer:ENSMUSP00000035879.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000044567Re-query CCDS DB by Protein ID:ENSMUSP00000035879
Original member Current member NCBI NM_025442.3 NP_079718.1 Accepted alive Link to Nucleotide Sequence:NM_025442.3Link to Protein Sequence:NP_079718.1Re-query CCDS DB by Nucleotide ID:NM_025442Re-query CCDS DB by Protein ID:NP_079718Link to BLAST:NP_079718.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079718.1 324 Q9DB25 324 100% 0 0

Chromosomal Locations for CCDS 17353.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 54735584 54735649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54738782 54738953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54739262 54739308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54741379 54741447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54742147 54742239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54744598 54744711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54745107 54745166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54746466 54746617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54748608 54748693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54749229 54749344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGCTACGCTGCTACTGCAGCTGCTGGGGCTCGGCGTGGCGCTGGCGGCTGCCGCGCTCATTCTGGTTT
CCATTGTGGCGTTTATAACTGCTACAAAAATGCCACCATGTTACCAACATGAGGAAGAGAAATTCTTCCT
CAATGCCAAAGGCCAGAAGGAAGCTCTCCCCAGCATCTGGGACTCGCCTACGAAACAGCTATCTGTTGTT
GTGCCTTCCTACAATGAAGAGAAACGGTTGCCTGTGATGATGGATGAAGCCCTGAACTACCTAGAAAAGA
GACAGAAACATGATTGTACGTTCACGTATGAGGTGATAGTGGTTGACGATGGCAGTGAAGACCAGACGTC
AAAGGTCGCTTTAAAATACTGCCAGAAATACGGAAGTGACAAAGTCCGGGTGATAACGCTGGTGCGGAAC
CGTGGGAAAGGTGGTGCTGTTAGGATGGGTGTATTCAGTTCCCGAGGAGAGAAGATCCTCATGGCAGATG
CTGACGGAGCCACAAAGTTTCCAGATGTTGAGAAATTAGAAAAGGGGCTGAGTGATCTACAGCCATGGCC
TGAGCAAATGGCTATTGCATGTGGGTCTCGAGCTCATCTGGAGAAAGAATCGATTGCTCAGCGCTCTTAC
TTCCGTACCTTTCTTATGTACGGATTCCATTTCCTGGTGTGGTTCCTCTGTGTCAAAGGAATCAGGGACA
CACAGTGCGGGTTCAAATTACTGACCCGAGAAGCAGCAGCCCGGACCTTCTCGTCTCTGCACATTGAACG
ATGGGCATTTGATGTAGAGCTGCTGTACATAGCACAGTGTCTTCAAATCCCAATAGCAGAAGTTGCTGTC
AACTGGACAGAAATTGAGGGTTCTAAGTTAGTTCCATTCTGGAGCTGGCTACAAATGGGCAAAGACCTGC
TTTTCATCCGACTTCGGTATCTGACGGGTGCCTGGAGGCTCAAGCAAACACGGAAAGCGAGTTAG

Translation (324 aa):
MATLLLQLLGLGVALAAAALILVSIVAFITATKMPPCYQHEEEKFFLNAKGQKEALPSIWDSPTKQLSVV
VPSYNEEKRLPVMMDEALNYLEKRQKHDCTFTYEVIVVDDGSEDQTSKVALKYCQKYGSDKVRVITLVRN
RGKGGAVRMGVFSSRGEKILMADADGATKFPDVEKLEKGLSDLQPWPEQMAIACGSRAHLEKESIAQRSY
FRTFLMYGFHFLVWFLCVKGIRDTQCGFKLLTREAAARTFSSLHIERWAFDVELLYIAQCLQIPIAEVAV
NWTEIEGSKLVPFWSWLQMGKDLLFIRLRYLTGAWRLKQTRKAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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