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Report for CCDS13894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13894.1 Public Homo sapiens 22 PATZ1 24 110 108 CCDS HistoryNCBI Gene:23598Re-query CCDS DB by CCDS ID:13894.1Re-query CCDS DB by GeneID:23598See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13894.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266269.10 ENSP00000266269.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266269.10Link to Ensembl Protein Viewer:ENSP00000266269.5Re-query CCDS DB by Nucleotide ID:ENST00000266269Re-query CCDS DB by Protein ID:ENSP00000266269
Original member Current member NCBI NM_014323.3 NP_055138.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014323.3Link to Protein Sequence:NP_055138.2Re-query CCDS DB by Nucleotide ID:NM_014323Re-query CCDS DB by Protein ID:NP_055138Link to BLAST:NP_055138.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055138.2 687 Q9HBE1-1 687 100% 0 0

Chromosomal Locations for CCDS 13894.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 31326891 31327309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31328787 31328924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31335692 31335863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31342897 31342960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31344332 31345602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2064 nt):
ATGGAGCGGGTGAACGACGCTTCGTGCGGCCCGTCTGGCTGCTACACATACCAGGTGAGCAGACACAGCA
CGGAGATGCTGCACAACCTGAACCAGCAGCGCAAAAACGGCGGGCGCTTCTGCGACGTGCTCTTGCGGGT
AGGCGACGAGAGCTTCCCAGCGCACCGCGCCGTGCTGGCCGCCTGCAGCGAGTACTTTGAGTCGGTGTTC
AGCGCCCAGTTGGGCGACGGCGGAGCTGCGGACGGGGGTCCGGCTGATGTAGGGGGCGCGACGGCAGCAC
CAGGCGGCGGGGCCGGGGGCAGCCGGGAGCTGGAGATGCACACTATCAGCTCCAAGGTATTTGGGGACAT
TCTGGACTTCGCCTACACTTCCCGCATCGTGGTGCGCTTGGAGAGCTTTCCCGAACTCATGACGGCCGCC
AAGTTCCTGCTGATGAGGTCGGTTATCGAGATCTGCCAGGAAGTCATCAAACAGTCCAACGTACAGATCC
TGGTACCCCCTGCCCGCGCCGATATAATGCTCTTTCGCCCCCCTGGGACCTCGGACTTGGGCTTCCCTTT
GGACATGACCAACGGGGCAGCCTTGGCAGCCAACAGCAATGGCATCGCCGGCAGCATGCAGCCAGAGGAG
GAGGCAGCTCGGGCGGCTGGTGCAGCCATTGCAGGCCAAGCCTCTTTGCCTGTGTTACCTGGGGTGGACC
GCTTGCCCATGGTGGCTGGACCCCTATCCCCCCAACTGCTGACTTCCCCATTCCCCAGTGTGGCATCCAG
TGCCCCTCCCCTGACTGGCAAGCGAGGCCGGGGCCGCCCAAGGAAGGCCAACCTGCTGGACTCAATGTTT
GGGTCCCCAGGGGGCCTGAGGGAGGCAGGCATCCTTCCATGCGGTCTATGTGGTAAGGTGTTCACTGATG
CCAACCGGCTCCGGCAGCACGAGGCCCAGCACGGTGTCACCAGCCTCCAGCTGGGCTACATCGACCTTCC
TCCTCCGAGGCTGGGTGAGAATGGGCTACCCATCTCTGAAGACCCCGACGGCCCCCGAAAGAGGAGCCGG
ACCAGGAAGCAGGTGGCTTGTGAGATCTGCGGCAAGATCTTCCGTGATGTGTATCATCTTAACCGGCACA
AGCTGTCCCACTCTGGGGAGAAGCCCTACTCCTGCCCTGTGTGTGGGTTGCGGTTCAAGAGAAAAGACCG
CATGTCCTACCATGTGCGGTCCCATGATGGGTCCGTGGGCAAGCCTTACATCTGCCAGAGCTGTGGGAAA
GGCTTCTCCAGGCCTGATCACTTGAACGGACATATCAAGCAGGTGCACACTTCTGAGCGGCCTCACAAGT
GTCAGACCTGCAATGCTTCTTTTGCCACCCGAGACCGTCTGCGCTCCCACCTGGCCTGTCATGAAGACAA
GGTGCCCTGCCAGGTGTGTGGGAAGTACTTGCGGGCAGCATACATGGCAGACCACCTGAAGAAGCACAGC
GAGGGGCCCAGCAACTTCTGCAGTATCTGTAACCGAGGTTTCTCCTCTGCCTCCTACTTAAAGGTCCATG
TTAAAACCCACCACGGTGTTCCCCTTCCCCAGGTCTCCAGGCACCAGGAGCCCATCCTGAATGGGGGAGC
AGCGTTCCACTGCGCCAGGACCTATGGCAACAAAGAAGGCCAGAAATGCTCACATCAGGATCCGATTGAG
AGCTCTGACTCCTATGGTGACCTCTCAGATGCCAGCGACCTGAAGACGCCAGAGAAGCAGAGTGCCAATG
GCTCTTTCTCCTGCGACATGGCAGTCCCCAAAAACAAAATGGAGTCTGATGGGGAGAAGAAGTACCCATG
CCCTGAATGTGGGAGCTTCTTCCGCTCTAAGTCCTACTTGAACAAACACATCCAGAAGGTGCATGTCCGG
GCTCTCGGGGGCCCCCTGGGGGACCTGGGCCCTGCCCTTGGCTCACCTTTCTCTCCTCAGCAGAACATGT
CTCTCCTCGAGTCCTTTGGGTTTCAGATTGTTCAGTCGGCATTTGCGTCATCTTTAGTAGATCCTGAGGT
TGACCAGCAGCCCATGGGGCCTGAAGGGAAATGA

Translation (687 aa):
MERVNDASCGPSGCYTYQVSRHSTEMLHNLNQQRKNGGRFCDVLLRVGDESFPAHRAVLAACSEYFESVF
SAQLGDGGAADGGPADVGGATAAPGGGAGGSRELEMHTISSKVFGDILDFAYTSRIVVRLESFPELMTAA
KFLLMRSVIEICQEVIKQSNVQILVPPARADIMLFRPPGTSDLGFPLDMTNGAALAANSNGIAGSMQPEE
EAARAAGAAIAGQASLPVLPGVDRLPMVAGPLSPQLLTSPFPSVASSAPPLTGKRGRGRPRKANLLDSMF
GSPGGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDLPPPRLGENGLPISEDPDGPRKRSR
TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGK
GFSRPDHLNGHIKQVHTSERPHKCQTCNASFATRDRLRSHLACHEDKVPCQVCGKYLRAAYMADHLKKHS
EGPSNFCSICNRGFSSASYLKVHVKTHHGVPLPQVSRHQEPILNGGAAFHCARTYGNKEGQKCSHQDPIE
SSDSYGDLSDASDLKTPEKQSANGSFSCDMAVPKNKMESDGEKKYPCPECGSFFRSKSYLNKHIQKVHVR
ALGGPLGDLGPALGSPFSPQQNMSLLESFGFQIVQSAFASSLVDPEVDQQPMGPEGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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