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Report for CCDS28838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28838.1 Public Mus musculus 17 Gnmt 23 108 98 CCDS HistoryNCBI Gene:14711Re-query CCDS DB by CCDS ID:28838.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28838.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002846.8 ENSMUSP00000002846.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002846.8Link to Ensembl Protein Viewer:ENSMUSP00000002846.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000002846Re-query CCDS DB by Protein ID:ENSMUSP00000002846
Original member Current member NCBI NM_010321.1 NP_034451.1 Accepted alive Link to Nucleotide Sequence:NM_010321.1Link to Protein Sequence:NP_034451.1Re-query CCDS DB by Nucleotide ID:NM_010321Re-query CCDS DB by Protein ID:NP_034451Link to BLAST:NP_034451.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034451.1 293 Q9QXF8 293 100% 0 0

Chromosomal Locations for CCDS 28838.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46725800 46725971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46726061 46726182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46726269 46726411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46726606 46726716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46727265 46727392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46728946 46729151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGTGGACAGCGTGTACCGTACCCGCTCCCTGGGGGTGGCGGCCGAAGGGCTCCCGGACCAGTATGCAG
ATGGGGAGGCCGCACGTGTGTGGCAGCTGTACATCGGGGACACCCGCAGCCGTACCGCAGAGTACAAGGC
GTGGTTGCTTGGGCTGTTGCGCCAGCACGGGTGCCACAGGGTGCTGGACGTAGCCTGTGGCACAGGAGTG
GACTCCATCATGCTGGTGGAAGAGGGCTTCAGCGTGATGAGCGTGGACGCCAGCGACAAGATGCTGAAAT
ATGCGCTTAAGGAGCGCTGGAACCGGAGGAAAGAGCCATCCTTTGACAATTGGGTCATTGAAGAAGCCAA
CTGGTTGACGCTGGACAAAGATGTGCTTTCAGGAGATGGCTTTGATGCTGTCATCTGCCTTGGGAACAGT
TTTGCTCACTTGCCAGACTGCAAAGGTGACCAGAGCGAGCACCGGCTGGCACTAAAGAACATTGCAAGCA
TGGTGCGGCCCGGGGGCCTGCTGGTGATCGACCACCGCAACTACGACTATATCCTCAGCACAGGCTGTGC
GCCCCCGGGGAAGAACATCTACTATAAGAGTGACCTGACCAAGGACATTACGACGTCAGTACTGACAGTC
AACAACAAAGCCCACATGGTAACCCTGGACTACACAGTGCAGGTGCCAGGCACTGGCAGAGATGGCTCTC
CTGGCTTCAGTAAGTTCCGGCTCTCTTACTACCCACACTGTTTGGCGTCTTTCACGGAGTTGGTGCGAGC
AGCCTTTGGGGGCAGGTGCCAGCACAGCGTCCTGGGTGACTTCAAGCCCTACAAGCCTGGCCAGGCCTAC
GTTCCCTGCTACTTCATCCATGTGCTCAAGAAGACAGACTGA

Translation (293 aa):
MVDSVYRTRSLGVAAEGLPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGV
DSIMLVEEGFSVMSVDASDKMLKYALKERWNRRKEPSFDNWVIEEANWLTLDKDVLSGDGFDAVICLGNS
FAHLPDCKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTV
NNKAHMVTLDYTVQVPGTGRDGSPGFSKFRLSYYPHCLASFTELVRAAFGGRCQHSVLGDFKPYKPGQAY
VPCYFIHVLKKTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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