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Report for CCDS24957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24957.1 Public Mus musculus 11 Gp1ba 23 108 98 CCDS HistoryNCBI Gene:14723Re-query CCDS DB by CCDS ID:24957.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24957.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055184.6 ENSMUSP00000057563.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055184.6Link to Ensembl Protein Viewer:ENSMUSP00000057563.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000055184Re-query CCDS DB by Protein ID:ENSMUSP00000057563
Original member Current member EBI ENSMUST00000108551.2 ENSMUSP00000104191.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108551.2Link to Ensembl Protein Viewer:ENSMUSP00000104191.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108551Re-query CCDS DB by Protein ID:ENSMUSP00000104191
Current member NCBI NM_001431398.1 NP_001418327.1 Accepted alive Link to Nucleotide Sequence:NM_001431398.1Link to Protein Sequence:NP_001418327.1Re-query CCDS DB by Nucleotide ID:NM_001431398Re-query CCDS DB by Protein ID:NP_001418327Link to BLAST:NP_001418327.1
Original member NCBI NM_010326.3 NP_034456.2 Removed not alive Link to Nucleotide Sequence:NM_010326.3Link to Protein Sequence:NP_034456.2Re-query CCDS DB by Nucleotide ID:NM_010326Re-query CCDS DB by Protein ID:NP_034456Link to BLAST:NP_034456.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001418327.1 734 O35930 734 100% 0 0

Chromosomal Locations for CCDS 24957.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70639410 70641614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2205 nt):
ATGGCTCTCCTCATCTTGCTCTTCCTGCTGCCAAGTCCCTTGCATTCCCAGCACACTTGTAGTATCTCCA
AAGTGACCAGCCTGCTGGAAGTAAACTGTGAGAACAAGAAGCTGACAGCACTGCCTGCAGACCTGCCAGC
AGACACAGGCATCCTCCACCTGGGCGAGAACCAACTGGGTACCTTCTCCACAGCATCACTGGTGCATTTC
ACTCACCTCACTTATCTGTACCTGGATAGATGTGAGCTGACGAGCCTGCAGACCAATGGTAAACTGATAA
AGCTGGAAAACCTGGACTTATCCCATAATAACCTGAAAAGCCTGCCCTCCCTAGGATGGGCATTGCCTGC
ACTCACTACTCTAGACGTCTCCTTCAACAAGTTGGGCTCACTGTCTCCTGGTGTCCTGGATGGCCTAAGC
CAACTCCAAGAGCTCTACTTGCAGAACAATGATCTTAAGAGTCTGCCCCCCGGGCTCTTGTTGCCAACGA
CCAAGCTGAAGAAACTCAATCTGGCCAACAACAAATTGCGTGAGCTGCCCTCTGGGCTCCTAGATGGGCT
GGAGGATCTTGATACCCTCTACCTTCAAAGGAACTGGCTTCGCACAATACCAAAGGGCTTCTTTGGGACC
CTCCTCTTGCCTTTTGTTTTTCTCCACGCCAACAGCTGGTACTGTGATTGTGAAATCCTCTACTTCCGTC
ACTGGCTCCAGGAAAATGCCAACAATGTCTACTTATGGAAGCAGGGTGTGGATGTCAAGGACACAACTCC
TAACGTGGCCAGTGTACGATGTGCCAACTTGGACAATGCGCCTGTCTACTCCTACCCAGGGAAGGGCTGC
CCTACTAGTAGTGGTGACACAGACTATGATGACTATGATGATATCCCTGACGTCCCTGCCACAAGAACTG
AGGTCAAGTTCTCTACTAACACTAAAGTTCATACTACCCACTGGAGCCTACTCGCCGCAGCACCTTCTAC
TTCTCAAGACAGCCAAATGATTTCTTTGCCTCCAACTCATAAACCCACTAAGAAACAATCTACATTCATC
CACACACAGAGCCCAGGTTTCACCACACTCCCAGAGACCATGGAATCTAACCCAACCTTCTACAGTCTAA
AACTCAATACTGTACTCATCCCCTCCCCAACCACCCTAGAGCCCACCTCCACCCAGGCTACCCCAGAGCC
CAACATCCAACCAATGCTTACCACCTCCACCCTGACTACCCCAGAGCACAGCACCACCCCAGTGCCCACT
ACTACCATCCTGACAACCCCAGAGCACAGCACCATCCCAGTGCCCACTACTGCCATCCTGACTACCCCAA
AGCCCAGCACCATCCCAGTGCCCACTACTGCCACCCTGACTACCCTAGAGCCCAGCACCACCCCAGTGCC
CACTACTGCCACCTTAACTACCCCAGAGCCCAGCACCACCCTGGTACCCACTACTGCCACCCTGACTACC
CCAGAGCACAGCACCACCCCAGTGCCCACTACTGCCACTCTGACTACCCCAGAGCACAGCACCACCCCAG
TGCCCACTACTGCCACCCTGACTACCCCAGAGCCCAGCACCACTTTAACTAATCTAGTGTCCACTATCTC
CCCAGTGCTCACTACCACCCTGACCACTCCAGAGTCTACCCCAATTGAGACAATTTTAGAACAATTTTTT
ACCACAGAGCTCACTTTACTCCCTACCTTAGAATCCACCACCACAATAATCCCAGAGCAGAACAGCTTTC
TCAATCTCCCAGAGGTAGCTCTAGTAAGCTCTGATACTTCTGAAAGCAGTCCTTTTCTCAATTCTGACTT
TTGCTGCTTCCTCCCCCTGGGCTTCTATGTCCTTGGTCTCCTCTGGCTCCTATTTGCCTCTGTGGTCCTC
ATCTTGTTGCTGACCTGGACCTGGCATGTGACACCACATAGTCTGGACATGGAACAATCTGCTGCATTGG
CCACAAGCACTCACACCACAAGCCTGGAGGTGCAGAGGGCAAGGCAAGTAACTATGCCCCGGGCCTGGCT
GCTCTTCCTTCAAGGATCACTCCCTACTTTCCGGTCTAGCCTTTTCCTGTGGGTAAGGCCTAATGGGCGA
GTGGGGCCTCTGGTAGCAGGACGGCGACCCTCAGCTCTGAGTCAGGGTCGTGGTCAGGACCTATTGGGCA
CAGTGGGCATTAGGTACTCAGGCCATAGTCTGTGA

Translation (734 aa):
MALLILLFLLPSPLHSQHTCSISKVTSLLEVNCENKKLTALPADLPADTGILHLGENQLGTFSTASLVHF
THLTYLYLDRCELTSLQTNGKLIKLENLDLSHNNLKSLPSLGWALPALTTLDVSFNKLGSLSPGVLDGLS
QLQELYLQNNDLKSLPPGLLLPTTKLKKLNLANNKLRELPSGLLDGLEDLDTLYLQRNWLRTIPKGFFGT
LLLPFVFLHANSWYCDCEILYFRHWLQENANNVYLWKQGVDVKDTTPNVASVRCANLDNAPVYSYPGKGC
PTSSGDTDYDDYDDIPDVPATRTEVKFSTNTKVHTTHWSLLAAAPSTSQDSQMISLPPTHKPTKKQSTFI
HTQSPGFTTLPETMESNPTFYSLKLNTVLIPSPTTLEPTSTQATPEPNIQPMLTTSTLTTPEHSTTPVPT
TTILTTPEHSTIPVPTTAILTTPKPSTIPVPTTATLTTLEPSTTPVPTTATLTTPEPSTTLVPTTATLTT
PEHSTTPVPTTATLTTPEHSTTPVPTTATLTTPEPSTTLTNLVSTISPVLTTTLTTPESTPIETILEQFF
TTELTLLPTLESTTTIIPEQNSFLNLPEVALVSSDTSESSPFLNSDFCCFLPLGFYVLGLLWLLFASVVL
ILLLTWTWHVTPHSLDMEQSAALATSTHTTSLEVQRARQVTMPRAWLLFLQGSLPTFRSSLFLWVRPNGR
VGPLVAGRRPSALSQGRGQDLLGTVGIRYSGHSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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