NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12214.1 Public Homo sapiens 19 ZNF560 24 110 108 CCDS HistoryNCBI Gene:147741Re-query CCDS DB by CCDS ID:12214.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12214.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301480.5 ENSP00000301480.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301480.5Link to Ensembl Protein Viewer:ENSP00000301480.3Re-query CCDS DB by Nucleotide ID:ENST00000301480Re-query CCDS DB by Protein ID:ENSP00000301480
Original member Current member NCBI NM_152476.3 NP_689689.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152476.3Link to Protein Sequence:NP_689689.2Re-query CCDS DB by Nucleotide ID:NM_152476Re-query CCDS DB by Protein ID:NP_689689Link to BLAST:NP_689689.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689689.2 790 Q96MR9 790 100% 0 0

Chromosomal Locations for CCDS 12214.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 9466574 9468334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9469105 9469187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9469630 9469710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9470392 9470518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9471296 9471378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9473179 9473259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9474199 9474325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9475284 9475313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGGCTTACTGCCTGACAAATTGTTATCAGTACTCCGTGACCTTTGAGGATACAGCTGTGGACTTCACCC
AGGAGGAGTGGATTTTACTGGACCCAGTTCAGAGAAACTTATACAGAGATGTGATGCTGGAGAATTATGA
GAACGTGGCCAAAGTAGGATTTCAGCTCTTTAAACCCAGTGTCATCTCTTGGTTGGAAGAAGAAGAGTTG
AGAACCTTGCAGCAAGGAGTTCTCCAAGACTGGGCAATAAAACATCAAACCAGTGTTTCAGCACTGCAGC
AGGAGTTTTGGAAAATACAAACTTCTAATGGGATACAAATGGACCTGGTAACCTTTGACAGTGTGGCTGT
GGAGTTCACCCAGGAAGAGTGGACTTTACTGGACCCAGCTCAGAGAAACCTGTACAGTGATGTGATGCTG
GAGAACTACAAGAACCTGTCCTCAGTAGGTTACCAGCTCTTCAAACCCAGTCTGATCTCTTGGCTGGAGG
AAGAGGAAGAGTTGAGCACACTGCCAAGAGTTCTCCAAGAATGGAAAATGTGCCTGAAAACCAAAGGGCC
AGCCCTTTGGCAAGATAATTTTTGTTTAAAAACATTAAATGGGATACAGTTGGCAAGAAACCAAAATGGA
GAGGAACTCTATGACTGTAAGCAATGTGAAGATGTCTTCTGTAAACATCCATGCCTTAAGACCAACATGA
GTACTCAAAATAGAGGCAACACGTCTGAATGTATTCAGTATGCAAAAGACCTCCTTTCTCTATACAATAA
AACCTCTACCATAAGGAAAGTTTCTGTGTTCAGTAAGCATGGAAAATCTTTCCGCCTGATTTTAAATGTT
CAGGTCCAGAGAAAGTGTACACAAGATAAATCCTTTGAAGGCACTGACTATGGGAAAGCCTTCATTTATC
AGTCATACCTTGAAGCACACAGGAAAACTCAGAGTGGAGAAAAACTCAATGAATGGAAGCAATGTGGGGA
AGCATTTACTCACTCCACAAGCCATGCTGTAAATGTTGAAACACACATTATTAAAAACCCCTATGAATGT
AAGGAATGTGGAAAAGATTTTAGATACCCTACCCACCTTAATAATCACATGCAAACCCACATTGGGATAA
AACCTTATAAATGTAAGCACTGTGGCAAAACCTTCACTGTGCCGTCAGGCTTTCTTGAACATGTACGAAC
TCACACTGGAGAGAAGCCCTATGGGTGTAAGGAATGTGGTAAAGCCTTTGGTACATCTGCAGGCCTTATT
GAACATATAAGATGTCACGCCAGAGAGAAAACCTTTAAATGTGACCACTGTGGGAAAGCCTTTATTTCTT
ACCCATCTCTTTTTGGACATTTGAGAGTTCATAATGGAGAGAAGCCATATGAGCATAAGGAATATGGGAA
GGCCTTTGGTACATCCTCAGGTGTTATTGAAGATAGAAGAAGTAACACAGGACAGAAACGCTTTGATTGT
GACCAGTGTGGGAAAGTCTTTGTTTCTTTCTCATCTCTTTTTGCTCATTTGAGAACTCACACTGGTGAGA
AGCCCTTTAAGTGTTACAAATGTGGGAAACCATTTACCTCTTCTGCCTGTCTTCGTATTCACATGCGAAC
TCACACAGAAGAGAGACTCTATCAATGTAAGAAATGTGGTAAAGCTTTCACTAAGTGCTCATATCTTACC
AAACATTTACGAACACACGCTGGAGAGAAACCCTATGAATGTATGAAATGTGGGAAAGCCTTCACTGAGC
GCTCATACCTTACTAAACATTTACGAAGACACAGTGGAGAGAAGCCATATGAATGTAAGAAATGTGGAAA
AGCCTTCACAGAACGCTCAGATCTTACTAAACATTTACGAAGACACACTGGAGATAAGCCCTATGAATAT
AAGGACTGTGGGAAAGCCTTTGTTGTCTCCTCCAGTCTAGTTGATCATTTAAGAACTCACACTGGATATA
AACCCTATAAATGTAATGCATGTGAAAAAGCTTACAGTAGGTCTTGTGTACTAACTCAACACTTAAAAAC
TCATGCAGCAGAGAAGACCTCTGAATGTAACGCATGTGGAAATTCCTTTCGAAATTCCATGTGCTTTCAT
GATCGCTTAAAAACTCTCACCAAAATAAAACCCTATAAATGTAAGGACTGTGGGAAAGCCTTCACTTGTC
ATTCAGATCTTACTAATCATGTGCGAATTCACACTGGAGAGAAGCCCTATAAATGTAAGGAATGTGGGAA
GGCCTTCCGTACATCCTCAGGACGTATTCAACATTTAAGAACTCATATGGGAGAGAAACCCTTTGAATGT
GACCAGTGTGGGAAAGCCTTTGCTTCTTTCTCAGCTCGTATTGCACATTTGAAAACACACTAG

Translation (790 aa):
MAYCLTNCYQYSVTFEDTAVDFTQEEWILLDPVQRNLYRDVMLENYENVAKVGFQLFKPSVISWLEEEEL
RTLQQGVLQDWAIKHQTSVSALQQEFWKIQTSNGIQMDLVTFDSVAVEFTQEEWTLLDPAQRNLYSDVML
ENYKNLSSVGYQLFKPSLISWLEEEEELSTLPRVLQEWKMCLKTKGPALWQDNFCLKTLNGIQLARNQNG
EELYDCKQCEDVFCKHPCLKTNMSTQNRGNTSECIQYAKDLLSLYNKTSTIRKVSVFSKHGKSFRLILNV
QVQRKCTQDKSFEGTDYGKAFIYQSYLEAHRKTQSGEKLNEWKQCGEAFTHSTSHAVNVETHIIKNPYEC
KECGKDFRYPTHLNNHMQTHIGIKPYKCKHCGKTFTVPSGFLEHVRTHTGEKPYGCKECGKAFGTSAGLI
EHIRCHAREKTFKCDHCGKAFISYPSLFGHLRVHNGEKPYEHKEYGKAFGTSSGVIEDRRSNTGQKRFDC
DQCGKVFVSFSSLFAHLRTHTGEKPFKCYKCGKPFTSSACLRIHMRTHTEERLYQCKKCGKAFTKCSYLT
KHLRTHAGEKPYECMKCGKAFTERSYLTKHLRRHSGEKPYECKKCGKAFTERSDLTKHLRRHTGDKPYEY
KDCGKAFVVSSSLVDHLRTHTGYKPYKCNACEKAYSRSCVLTQHLKTHAAEKTSECNACGNSFRNSMCFH
DRLKTLTKIKPYKCKDCGKAFTCHSDLTNHVRIHTGEKPYKCKECGKAFRTSSGRIQHLRTHMGEKPFEC
DQCGKAFASFSARIAHLKTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH