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Report for CCDS20534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20534.1 Public Mus musculus 6 Gpr162 23 108 98 CCDS HistoryNCBI Gene:14788Re-query CCDS DB by CCDS ID:20534.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20534.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046893.9 ENSMUSP00000038536.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046893.9Link to Ensembl Protein Viewer:ENSMUSP00000038536.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046893Re-query CCDS DB by Protein ID:ENSMUSP00000038536
Original member Current member EBI ENSMUST00000204667.1 ENSMUSP00000145267.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204667.1Link to Ensembl Protein Viewer:ENSMUSP00000145267.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204667Re-query CCDS DB by Protein ID:ENSMUSP00000145267
Original member NCBI NM_001355257.1 NP_001342186.1 Updated not alive Link to Nucleotide Sequence:NM_001355257.1Link to Protein Sequence:NP_001342186.1Re-query CCDS DB by Nucleotide ID:NM_001355257Re-query CCDS DB by Protein ID:NP_001342186
Current member NCBI NM_001355257.2 NP_001342186.1 Accepted alive Link to Nucleotide Sequence:NM_001355257.2Link to Protein Sequence:NP_001342186.1Re-query CCDS DB by Nucleotide ID:NM_001355257Re-query CCDS DB by Protein ID:NP_001342186Link to BLAST:NP_001342186.1
Original member NCBI NM_013533.4 NP_038561.1 Updated not alive Link to Nucleotide Sequence:NM_013533.4Link to Protein Sequence:NP_038561.1Re-query CCDS DB by Nucleotide ID:NM_013533Re-query CCDS DB by Protein ID:NP_038561
Current member NCBI NM_013533.5 NP_038561.1 Accepted alive Link to Nucleotide Sequence:NM_013533.5Link to Protein Sequence:NP_038561.1Re-query CCDS DB by Nucleotide ID:NM_013533Re-query CCDS DB by Protein ID:NP_038561Link to BLAST:NP_038561.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342186.1 588 Q3UN16 588 100% 0 0
NP_038561.1 588 Q3UN16 588 100% 0 0

Chromosomal Locations for CCDS 20534.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124858669 124859220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124859492 124859649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124860023 124860212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124860819 124861685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGGCTCGGGGAGGGTTGGGGGCAGAAGAGGCCTCCCTACGCTCAAACGCATTGTCCTGGCTGGCCTGTG
GGCTCCTGGCCCTGCTGGCCAACGCTTGGATCATCCTTAGCATCTCAGCCAAACAGCAGAAACACAAGCC
ACTGGAGTTACTGCTCTGCTTCCTGGCCGGTACTCATATACTCATGGCGGCTGTGCCCCTTACCACCTTT
GCTGTGGTGCAGCTCCGGCGCCAGGCTTCCTCTGACTATGACTGGAACGAGAGCATCTGCAAGGTCTTTG
TGTCCACCTACTACACGCTGGCCCTGGCCACCTGCTTCACGGTCGCCTCGCTCTCCTACCATCGCATGTG
GATGGTGCGATGGCCCGTTAACTACCGCCTCAGCAACGCCAAGAAGCAGGCGCTGCATGCCGTCATGGGC
ATCTGGATGGTCAGCTTCATCCTCTCCACGCTGCCCTCCATCGGCTGGCACAACAACGGGGAGCGCTACT
ATGCCCGAGGCTGCCAGTTCATAGTCTCCAAGATCGGCCTCGGTTTTGGTGTCTGCTTCAGCCTCCTGCT
TCTTGGGGGCATTGTCATGGGGTTGGTCTGTGTGGCTATCACATTCTATCAGACACTGTGGGCCCGGCCC
CGGAGGGCTCGGCAGGCCCGGAGAGCGGGGGGCAGTGTGGGCACCAAAGCAGGGGGGCTGGGGGGGTTGG
GTACCCGGCCAGCTTTTGAGGTGCCAGCCATTGTGGTGGAGGATACTCGAGGGAAGCGGCGGTCCTCGCT
GGATGGCTCTGAATCTGCCAAGACATCCTTGCAGGTCACCAACTTGGTCAGCGCCATCGTCTTTCTCTAT
GACTCACTCACGGGGGTGCCCATTTTGGTGGTGAGCTTCTTCTCCTTGAAGTCAGACTCAGCTCCGCCAT
GGATGGTGTTGGCAGTGCTGTGGTGCTCCATGGCACAGACACTGCTCCTGCCCTCCTTCATCTGGTCCTG
TGAGCGCTACCGTGCAGATGTGCGCACAGTGTGGGAGCAGTGTGTGGCGATCATGTCCGAGGATGACGGT
GATGACGATGGCACCTGTGACGACTACACAGATGGCCGAGTGTGCAAAATTCGCTTTGATGCTAACGGGG
CCACAGGGTCAGGGAGTCGGGACCCCACCCAGGTGAAGCTGCTGCCTGGGCGGCACATGCTCTTCCCACC
GCTGGAGAGAGTACACTACTTACAGGTCCCTTTGTCCCGACGATTATCCCACGATGAGACCAACATCTTT
TCTACTCCTCGGGCACCAGGCTCCTTCCTGCACAAGTGGTCCTCATCGGATGATATCCGGATCCTCCCAG
CCCAGAGCCGAGCCCTCGGAGGCCCTCCAGAATACCTGGGACAGAGACACAGGCTGGAGGATGAGGAGGA
TGAGGAAGAGGCTGAAGGCGGGGGCTTGGCCAGCCTTCGACAGTTTCTAGAAAGTGGGGTTCTGGGGTCG
GGTGGGGGACCCCCACGAGGTCCCGGTTTTTTCCGGGAGGAGATCACCACCTTCATCGATGAGACACCTC
TGCCTTCTCCAACTGCGTCACCAGGACCCTCTCCTCGTAGGCCTAGACCACTGGGTTTTTCACCTCGACG
GCTCTCCCTTGGGTCTCCGGATAGCCGAGCCGTTGGACTTCCTTTGGGGTTAAGTGCAGGAAGACGCTGT
TCCCTGACCGGGAGCGAAGGGAGTTCAAGGGCTTGGGGAAGACCCTGGGGGCCAGGTAACCCCATCTTCC
CCCAGTTGACCCTGTGA

Translation (588 aa):
MARGGLGAEEASLRSNALSWLACGLLALLANAWIILSISAKQQKHKPLELLLCFLAGTHILMAAVPLTTF
AVVQLRRQASSDYDWNESICKVFVSTYYTLALATCFTVASLSYHRMWMVRWPVNYRLSNAKKQALHAVMG
IWMVSFILSTLPSIGWHNNGERYYARGCQFIVSKIGLGFGVCFSLLLLGGIVMGLVCVAITFYQTLWARP
RRARQARRAGGSVGTKAGGLGGLGTRPAFEVPAIVVEDTRGKRRSSLDGSESAKTSLQVTNLVSAIVFLY
DSLTGVPILVVSFFSLKSDSAPPWMVLAVLWCSMAQTLLLPSFIWSCERYRADVRTVWEQCVAIMSEDDG
DDDGTCDDYTDGRVCKIRFDANGATGSGSRDPTQVKLLPGRHMLFPPLERVHYLQVPLSRRLSHDETNIF
STPRAPGSFLHKWSSSDDIRILPAQSRALGGPPEYLGQRHRLEDEEDEEEAEGGGLASLRQFLESGVLGS
GGGPPRGPGFFREEITTFIDETPLPSPTASPGPSPRRPRPLGFSPRRLSLGSPDSRAVGLPLGLSAGRRC
SLTGSEGSSRAWGRPWGPGNPIFPQLTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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