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Report for CCDS12550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12550.1 Public Homo sapiens 19 TTC9B 24 110 108 CCDS HistoryNCBI Gene:148014Re-query CCDS DB by CCDS ID:12550.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12550.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311308.7 ENSP00000311760.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311308.7Link to Ensembl Protein Viewer:ENSP00000311760.6Re-query CCDS DB by Nucleotide ID:ENST00000311308Re-query CCDS DB by Protein ID:ENSP00000311760
Original member Current member NCBI NM_152479.6 NP_689692.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152479.6Link to Protein Sequence:NP_689692.2Re-query CCDS DB by Nucleotide ID:NM_152479Re-query CCDS DB by Protein ID:NP_689692Link to BLAST:NP_689692.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689692.2 239 Q8N6N2-1 239 100% 0 0

Chromosomal Locations for CCDS 12550.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40216163 40216272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40217187 40217369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40217955 40218381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGCAGCGCGGCGCGCTGTCCCCGGTGCTGATGCTCAGCGCTGCCCCGGAGCCTCCGCCGCGCCCGCCTC
CCGCCCTCTCCCCACCGGGCTCGGGCCCAGGCTCGGGCTCCCGCCATGGCTCGGCTCGTCCCGGTCCTAC
CCCAGAGCCGTCGGGGAGCCTGGGCGCGGCGCTCGACAGCAGCCTGCGTGCCGCCGTGGCGTTCAAGGCA
GAGGGCCAGCGCTGCTATCGAGAGAAGAAGTTCCGGGAGGCCATCGGCAAGTACCACCGAGCGCTGCTGC
AGCTGAAGGCGGCGCAGGGGGCCCGCCCTAGCGGCCTGCCCGCCCCCGCCCCCGGGCCCACCAGCAGCCC
CGGGCCGGCGCGCCTCAGCGAGGAGCAGCGGCGCCTGGTGGAGAGCACGGAGGTGGAGTGTTACGACTCC
CTCACGGCTTGCCTGCTGCAGTCGGAGCTGGTAAACTACGAGCGCGTGCGCGAGTACTGTCTCAAGGTAC
TGGAGAAGCAGCAGGGCAACTTCAAGGCCACCTACCGTGCCGGCATTGCCTTCTACCACCTGGGCGACTA
CGCACGCGCGCTGCGCTACCTGCAGGAGGCCCGCAGCCGGGAACCCACAGACACCAATGTGCTCCGCTAC
ATCCAGCTGACTCAGCTGAAGATGAATCGTTGCAGCCTCCAGCGGGAAGACAGTGGGGCTGGGTCCCAGA
CTCGGGATGTAATTGGCTGA

Translation (239 aa):
MQRGALSPVLMLSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRAAVAFKA
EGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAPGPTSSPGPARLSEEQRRLVESTEVECYDS
LTACLLQSELVNYERVREYCLKVLEKQQGNFKATYRAGIAFYHLGDYARALRYLQEARSREPTDTNVLRY
IQLTQLKMNRCSLQREDSGAGSQTRDVIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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