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Report for CCDS43497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43497.1 Public Homo sapiens 6 FAM162B 24 110 108 CCDS HistoryNCBI Gene:221303Re-query CCDS DB by CCDS ID:43497.1Re-query CCDS DB by GeneID:221303See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43497.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368557.6 ENSP00000357545.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368557.6Link to Ensembl Protein Viewer:ENSP00000357545.4Re-query CCDS DB by Nucleotide ID:ENST00000368557Re-query CCDS DB by Protein ID:ENSP00000357545
Original member Current member NCBI NM_001085480.3 NP_001078949.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001085480.3Link to Protein Sequence:NP_001078949.1Re-query CCDS DB by Nucleotide ID:NM_001085480Re-query CCDS DB by Protein ID:NP_001078949Link to BLAST:NP_001078949.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078949.1 162 Q5T6X4 162 100% 0 0

Chromosomal Locations for CCDS 43497.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116752597 116752695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116761977 116762085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116765147 116765255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116765405 116765576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGCTCAGGGCGGTCGGGAGCCTACTGCGCCTTGGCCGCGGGCTAACAGTCCGCTGCGGCCCCGGGGCGC
CTCTCGAGGCCACGCGACGGCCCGCACCGGCTCTTCCGCCCCGGGGTCTCCCCTGCTACTCCAGCGGCGG
GGCCCCCAGCAATTCTGGGCCCCAAGGTCACGGGGAGATTCACCGAGTCCCCACGCAGCGCAGGCCTTCG
CAGTTCGACAAGAAAATCCTGCTGTGGACAGGGCGTTTCAAATCGATGGAGGAGATCCCGCCTCGGATCC
CGCCAGAAATGATAGACACCGCAAGAAACAAAGCTCGAGTGAAAGCTTGTTACATAATGATTGGACTCAC
AATTATCGCCTGCTTTGCTGTGATAGTGTCAGCCAAAAGGGCTGTAGAACGACATGAATCCTTAACAAGT
TGGAACTTGGCAAAGAAAGCTAAGTGGCGTGAAGAAGCTGCATTGGCTGCACAGGCTAAAGCTAAATGA

Translation (162 aa):
MLRAVGSLLRLGRGLTVRCGPGAPLEATRRPAPALPPRGLPCYSSGGAPSNSGPQGHGEIHRVPTQRRPS
QFDKKILLWTGRFKSMEEIPPRIPPEMIDTARNKARVKACYIMIGLTIIACFAVIVSAKRAVERHESLTS
WNLAKKAKWREEAALAAQAKAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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