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Report for CCDS38013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38013.1 Public Mus musculus 19 Ina 23 108 98 CCDS HistoryNCBI Gene:226180Re-query CCDS DB by CCDS ID:38013.1Re-query CCDS DB by GeneID:226180See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38013.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037636.3 ENSMUSP00000041347.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037636.3Link to Ensembl Protein Viewer:ENSMUSP00000041347.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000037636Re-query CCDS DB by Protein ID:ENSMUSP00000041347
Original member Current member NCBI NM_146100.5 NP_666212.3 Accepted alive Link to Nucleotide Sequence:NM_146100.5Link to Protein Sequence:NP_666212.3Re-query CCDS DB by Nucleotide ID:NM_146100Re-query CCDS DB by Protein ID:NP_666212Link to BLAST:NP_666212.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666212.3 501 P46660 501 100% 0 0

Chromosomal Locations for CCDS 38013.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47014755 47015819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47021833 47021957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47023335 47023650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGAGCTTCGGATCGGAGCACTATTTGTGCTCCGCCTCCTCCTACCGCAAGGTGTTCGGGGACAGCTCGC
GCCTCTCCGCGCGCCTGTCCGGGCCGGGAGGCTCGGGCAGCTTCCGCTCGCAGTCGCTGTCCCGCAGCAA
TGTGGCCTCCACGGCCGCCTGCTCCTCGGCCTCGTCCCTCGGCCTGGGCCTGGCCTACCGCCGCCTGCCG
GCCTCCGACGGGCTGGACCTGAGCCAGGCGGCGGCGCGCACCAACGAGTACAAGATCATCCGCACTAACG
AGAAGGAGCAGCTGCAGGGCCTCAACGACCGCTTCGCCGTGTTCATCGAGAAGGTGCACCAGCTGGAGAC
GCAGAACCGTGCGCTCGAGGCCGAGCTGGCCGCGCTGCGCCAGCGCCACGCCGAGCCGTCGCGCGTCGGC
GAGCTCTTCCAGCGCGAGCTGCGCGAGCTGCGCGCGCAGCTGGAGGAGGCGAGCTCGGCGCGCGCGCAGG
CCCTGCTGGAGCGCGATGGGCTGGCCGAGGAGGTGCAGCGACTGCGGGCGCGCTGCGAGGAGGAGAGCCG
CGGGCGCGAAGGCGCCGAGCGCGCCCTGAAGGCGCAGCAGCGCGACGTGGACGGCGCCACCCTGGCCCGC
CTGGATCTGGAGAAGAAGGTGGAGTCGCTGCTGGACGAGCTGGCTTTCGTGCGCCAGGTCCACGACGAGG
AGGTGGCCGAGCTCCTGGCCACGTTGCAGGCGTCTTCGCAAGCCGCCGCCGAGGTGGACGTGGCCGTGGC
TAAACCAGACCTGACTTCGGCGCTGAGGGAGATCCGCGCGCAGTATGAGTCCCTGGCCGCTAAGAACCTG
CAGTCCGCCGAGGAGTGGTACAAGTCCAAGTTCGCCAACCTAAACGAGCAGGCTGCGCGCAGCACCGAAG
CCATCCGAGCCAGCCGAGAGGAGATCCACGAGTACCGGCGCCAGCTCCAGGCACGTACCATTGAGATAGA
GGGTCTGCGCGGAGCCAATGAGTCCCTGGAGAGGCAGATCTTGGAACTGGAGGAGCGGCACAGCGCTGAG
GTGGCCGGCTACCAGGACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCAC
GCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACAG
GAAGCTCCTGGAAGGTGAAGAGACGCGGTTTAGCACCGGCGGGTTAAGCATCTCGGGGCTGAATCCACTG
CCCAATCCCAGTTATTTGCTCCCTCCCAGAATCCTTAGCTCTACAGCCTCCAAAGTCTCCTCTGCCGGGC
TGTCCCTGAAAAAGGAGGAAGAAGAGGAGGAGGAAGAGGCCTCTAAGGAAGTCAGTAAGAAAACATCCAA
GGTAGGGGAAGGTTTCGAAGAGACACTGGGGGAAGCGGTAATATCTACGAAGAAAACTGGAAAGTCGGCT
ACAGAAGAAAGTACCAGTTCAAGCCAAAAAATGTAA

Translation (501 aa):
MSFGSEHYLCSASSYRKVFGDSSRLSARLSGPGGSGSFRSQSLSRSNVASTAACSSASSLGLGLAYRRLP
ASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQRHAEPSRVG
ELFQRELRELRAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGREGAERALKAQQRDVDGATLAR
LDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNL
QSAEEWYKSKFANLNEQAARSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAE
VAGYQDSIGQLESDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTGGLSISGLNPL
PNPSYLLPPRILSSTASKVSSAGLSLKKEEEEEEEEASKEVSKKTSKVGEGFEETLGEAVISTKKTGKSA
TEESTSSSQKM


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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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