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Report for CCDS79621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79621.1 Public Mus musculus 18 Pcdhb12 23 108 98 CCDS HistoryNCBI Gene:93883Re-query CCDS DB by CCDS ID:79621.1Re-query CCDS DB by GeneID:93883See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79621.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055495.5 ENSMUSP00000050357.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055495.5Link to Ensembl Protein Viewer:ENSMUSP00000050357.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000055495Re-query CCDS DB by Protein ID:ENSMUSP00000050357
Original member Current member NCBI NM_053137.2 NP_444367.1 Accepted alive Link to Nucleotide Sequence:NM_053137.2Link to Protein Sequence:NP_444367.1Re-query CCDS DB by Nucleotide ID:NM_053137Re-query CCDS DB by Protein ID:NP_444367Link to BLAST:NP_444367.1

Chromosomal Locations for CCDS 79621.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37435803 37438172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2370 nt):
ATGCCAGGGCAAAGGCAAGTCTTTTTTCTTACTATATTGTTGCTGTTTTGGAAGTCTGACTCTGAGGCAA
TTAGATATTCCATGCCAGAAGAAAAGGAGAGTGGCTATTTGGTGGCAAACGTGGCAAAAGATCTGGGGCT
CAGGGTTGAAGAACTGGCCACTAGAGGAGCTCAAATCCATTACAGAGGAAACAAAGAGCTCTTGCAGATG
GATGCAGAGACTGGGAATTTGTTCTTAAAGGAAAAACTAGACCGGGAGGCACTGTGTGGGGCGACAGAAC
CCTGTGTGCTGCACTTCCAGATCATACTGGAAAACCCTGTGCAGTTCTTCCAAACTGAACTGCAGCTCAC
TGATATAAACGACCACTCTCCGGAGTTCTCTGACACGGAAATGCTTCTAACAATTCCTGAGAACGCCCAG
CCAGGGACTGTGTTTCCTCTGAAGGCAGCTCATGACTCTGACATAGGGAGCAATGCCGTTCAGAACTACA
CAGTCAATCCCAACATCCATTTCCATGTGGTTACTCTCAGTCGCTCAGATGGCAGGAAATACCCAGAGCT
GGTGCTGGACAGAGCCCTGGACAGGGAGGAGCAGCCTGAGCTCACTTTAACCCTCACTGCTCTTGATGGC
GGATCCCCACCCAGGTCAGGAACCACCGAAGTTCACATTGAAGTCGTGGACATCAATGATAACGCCCCCC
AGTTTATACAGTCACTCTATGAGGTGCAAGTTCCTGAGAACAGTCCCCTCAATGCCTTAGTTGTCATGGT
CTCTGCCACGGACTTAGATGCTGGGATATATGGCAATGTCGCCTATTCTCTGTTTCAAGGGGATGGATTA
TCTCAACCATTTGTAATAGACAAAATCACAGGAGAAATCCGTCTGACCAAAGAGCTAGATTTCGAGGTAA
GTCACCATTATACCATAGAAATTGCAGCCACCGATGGAGGGGGCCTTTCAGGAAAATGCACTGTGGTTAT
ACAGGTGTTGGATGTGAATGACAACGCCCCAGAGTTGGCGATCAGGAAGCTCACAGTCCCTGTCCCAGAA
AATTCCGCCGAGACTGTAGTTGCTGTTTTTAGTGTTTCTGATTCTGATTCGGGGGACAACGGAAGGATAG
TGTGTTCTATTCAGAACAATATCCCATTTCTCCTGAAACCCACATTTGAGAATTACTACACCTTAGTGAC
CGAGGGGCCACTTGATAGAGAGAGCAGAGCTGAGTACAACATCACCATCACTGTCTGGGATTTGGGCACA
CCCAGGCTCACAACCCAGCACACCATAACAGTGCAGGTGGCCGACATCAACGACAACGCCCCTGCCTTCA
CCCAAACATCCTATACCCTGTTTGTGCAAGAGAACAACAGTCCCGCCCTGCATATAGGCACCATCAGTGC
CACAGACTCAGATTCAGGCTCCAACGCCCACATCACCTACTCGCTGCTGCCGCCCCACGATTCACAGCTG
GCCCTCGCCTCGCTAGTCTCCATCAATTCAGACAATGGGCAGCTGTTTGCGCTCAGGGCGATGGACTATG
AGATGCTTCAGGCCTTCGAACTGCACGTGGACGCCACAGATGGAGGCTCACCTGCGCTCAGCAGCCAGGC
CCTCGTGCGTGTGGTAGTGCTAGATGACAATGACAATTCACCTTTCGTGCTCTACCCGATGCAGAATGCC
TCAGCACCCTGTACGGAGCTATTGCCCAGGGCAGCAGAGCCTGGATACCTGATCACCAAAGTGGTGGCTG
TGGATCGCGACTCTGGCCAGAATGCCTGGCTGTCATTCCAACTGCTCAAGGCTACAGAGCCAGGGCTGTT
CAGTGTGTGGGCGCACAATGGGGAGGTGCGCACCACCAGGCTGCTGAGTGAGCGCGATGCTCCAAAGCAC
AAGCTGCTGCTGCTGGTCAAGGACAATGGCGATCCTCCGCGCTCTGCCAGCGTCACGCTGCACGTGCTAG
TGGTGGATGGCTTCTCGCAGCCTTACCTGCCTCTGCCAGAGGTGGCGCGGGATTCCACGCAGGACGATTA
TGACGTGCTCACGCTGTACCTAGTCGTTGCCTTGGCATCTGTATCTTCTCTCTTCCTCTTGTCTGTGCTG
TTGTTTGTGGGGGTGAGACTGTGCAGGAGGGCCAGGGCAGCCTCCCTGGGTGATTACTCTGTACCTGAGG
GACACTTTCCTAGCCACCTGGTGGATGTCAGTAGAGCAGGGACCCTGTCCCAGAGCTATCAATATGAGGT
GTGTCTTAATGGAGGTACTGGAACAAACGAGTTCAATTTTCTTAAACCATTGTTTCCTATTCTTCCGACC
CAGGCTGCTGCTGAAGAAAGAGAAAATGCTGTTGTGCGCAATAGCGTTGAATTCTATTAG

Translation (789 aa):
MPGQRQVFFLTILLLFWKSDSEAIRYSMPEEKESGYLVANVAKDLGLRVEELATRGAQIHYRGNKELLQM
DAETGNLFLKEKLDREALCGATEPCVLHFQIILENPVQFFQTELQLTDINDHSPEFSDTEMLLTIPENAQ
PGTVFPLKAAHDSDIGSNAVQNYTVNPNIHFHVVTLSRSDGRKYPELVLDRALDREEQPELTLTLTALDG
GSPPRSGTTEVHIEVVDINDNAPQFIQSLYEVQVPENSPLNALVVMVSATDLDAGIYGNVAYSLFQGDGL
SQPFVIDKITGEIRLTKELDFEVSHHYTIEIAATDGGGLSGKCTVVIQVLDVNDNAPELAIRKLTVPVPE
NSAETVVAVFSVSDSDSGDNGRIVCSIQNNIPFLLKPTFENYYTLVTEGPLDRESRAEYNITITVWDLGT
PRLTTQHTITVQVADINDNAPAFTQTSYTLFVQENNSPALHIGTISATDSDSGSNAHITYSLLPPHDSQL
ALASLVSINSDNGQLFALRAMDYEMLQAFELHVDATDGGSPALSSQALVRVVVLDDNDNSPFVLYPMQNA
SAPCTELLPRAAEPGYLITKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLLSERDAPKH
KLLLLVKDNGDPPRSASVTLHVLVVDGFSQPYLPLPEVARDSTQDDYDVLTLYLVVALASVSSLFLLSVL
LFVGVRLCRRARAASLGDYSVPEGHFPSHLVDVSRAGTLSQSYQYEVCLNGGTGTNEFNFLKPLFPILPT
QAAAEERENAVVRNSVEFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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