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Report for CCDS43590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43590.1 Public Homo sapiens 7 ZNF479 24 110 108 CCDS HistoryNCBI Gene:90827Re-query CCDS DB by CCDS ID:43590.1Re-query CCDS DB by GeneID:90827See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43590.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319636.10 ENSP00000324518.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319636.10Link to Ensembl Protein Viewer:ENSP00000324518.6Re-query CCDS DB by Nucleotide ID:ENST00000319636Re-query CCDS DB by Protein ID:ENSP00000324518
Original member Current member EBI ENST00000331162.8 ENSP00000333776.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000331162.8Link to Ensembl Protein Viewer:ENSP00000333776.4Re-query CCDS DB by Nucleotide ID:ENST00000331162Re-query CCDS DB by Protein ID:ENSP00000333776
Original member Current member NCBI NM_001370129.2 NP_001357058.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370129.2Link to Protein Sequence:NP_001357058.1Re-query CCDS DB by Nucleotide ID:NM_001370129Re-query CCDS DB by Protein ID:NP_001357058Link to BLAST:NP_001357058.1
Original member Current member NCBI NM_033273.3 NP_150376.1 Accepted alive Link to Nucleotide Sequence:NM_033273.3Link to Protein Sequence:NP_150376.1Re-query CCDS DB by Nucleotide ID:NM_033273Re-query CCDS DB by Protein ID:NP_150376Link to BLAST:NP_150376.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357058.1 524 Q96JC4 524 100% 0 0
NP_150376.1 524 Q96JC4 524 100% 0 0

Chromosomal Locations for CCDS 43590.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 57119840 57121152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 57126018 57126113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 57126592 57126718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 57132286 57132324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGGCTAAAAGACCAGGACCCCCTGGAAGCCGAGAAATGGGACTGTTGACATTCAGAGACATAGCTATAG
AATTCTCTCTGGAGGAATGGCAATGCCTGGATTGTGCTCAGCGGAATTTATATAGAGATGTGATGTTAGA
GAACTACAGAAACCTGGTCTCCCTGGGTATTGCTGTCTCTAAGCCAGACTTGATCACCTGTCTGGAGCAA
AATAAAGAGTCCCAGAATATAAAGAGAAATGAGATGGTAGCCAAACACCCAGTTACGCGTTCCCATTTCA
CCCAAGACCTTCAGCCAGAGCAGGGCATCAAAGATTCACTCCAAAAAGTAATACCAAGAACATATGGAAA
ATGTGGACATGAGAAATTACAATTTAAAAAATGCTGTAAAAGTGTGGGTGAATATGAGGTGCACAAGGGA
GGTTATAGTGAAGTTAACCAATGTTTGTCAACTACCCAAAACAAAATATTTCAGACTCATAAATATGTCA
AAGTCTTTGGTAAATTTTCAAATTCCAATAGAGATAAAACAAGATATACTGGAAATAAACATTTCAAATG
TAACAAATATGGCAAATCATTTTGCATGCTTTCACACCTAAATCAACATCAGGTAATTCATACTAGGGAG
AAGTCCTACAAATGCAAAGAATGTGGCAAATCCTTTAACTGCTCCTCAAACCATACTACACATAAAATAA
TTCATACTGGAGAGAAACCATATAGATGTGAGGAATGTGGCAAAGCCTTTAGCTGGTCTGCAAACCTTAC
TAGACATAAGAGAACTCATACTGGAGAGAAACCCTACACGTGTGAAGAATGTGGCCAAGCCTTTAGGCGC
TCCTCAGCACTTACTAACCACAAGAGAATTCATACTGGAGAGAGACCCTACAAATGTGAAGAATGTGGCA
AAGCCTTTAGCGTATCCTCAACCCTCACTGACCACAAGAGAATTCATACTGGAGAGAAACCCTGCAGGTG
TGAGGAATGTGGCAAAGCCTTTAGCTGGTCCTCAAACCTTACTAGACATAAGAGAATTCATACTAGAGAG
AAACCCTATGCCTGTGAAGAATGTGGCCAAGCCTTTAGCTTATCCTCGAACCTTATGAGACATAGGAGAA
TTCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCCAAGACTTTAGGCGCTCCTCAGCACTTAC
TATCCACAAGAGAATTCATACTGGAGAGAGACCCTACAAATGTGAAGAGTGTGGCAAAGTCTTTAGCTTA
TCCTCAACCCTCACTGACCACAAGAGAATTCATACTGGAGAGAGACCCTACAAATGTGAAGAATGTGGCA
AAGCCTTTAGCTTATCCTCAACCCTCACTGACCACAAGAGAATTCATACTGGAGAGAGACCCTACACATG
TGAAGAATGTGGCAAAGCCTTTAATTGCTCCTCAACCCTTATGCAACATAAGAGAATTCATACTGGAGAG
AAACCCTACAAATGTGAAGAATGTGAGCAAGCTTTTAAGTGGCATTCAAGTCTTGCTAAACATAAGATAA
TTCACACTGGAGAGAAACCCTACAAATGTGAATAA

Translation (524 aa):
MAKRPGPPGSREMGLLTFRDIAIEFSLEEWQCLDCAQRNLYRDVMLENYRNLVSLGIAVSKPDLITCLEQ
NKESQNIKRNEMVAKHPVTRSHFTQDLQPEQGIKDSLQKVIPRTYGKCGHEKLQFKKCCKSVGEYEVHKG
GYSEVNQCLSTTQNKIFQTHKYVKVFGKFSNSNRDKTRYTGNKHFKCNKYGKSFCMLSHLNQHQVIHTRE
KSYKCKECGKSFNCSSNHTTHKIIHTGEKPYRCEECGKAFSWSANLTRHKRTHTGEKPYTCEECGQAFRR
SSALTNHKRIHTGERPYKCEECGKAFSVSSTLTDHKRIHTGEKPCRCEECGKAFSWSSNLTRHKRIHTRE
KPYACEECGQAFSLSSNLMRHRRIHTGEKPYTCEECGQDFRRSSALTIHKRIHTGERPYKCEECGKVFSL
SSTLTDHKRIHTGERPYKCEECGKAFSLSSTLTDHKRIHTGERPYTCEECGKAFNCSSTLMQHKRIHTGE
KPYKCEECEQAFKWHSSLAKHKIIHTGEKPYKCE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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