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Report for CCDS9573.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9573.2 Public Homo sapiens 14 OXA1L 24 110 108 CCDS HistoryNCBI Gene:5018Re-query CCDS DB by CCDS ID:9573.2Re-query CCDS DB by GeneID:5018See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 9573.1
The coding region has been updated to shorten the N-terminus to one that is more supported by available conservation data or publications.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9573.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612549.6 ENSP00000483491.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000612549.6Link to Ensembl Protein Viewer:ENSP00000483491.2Re-query CCDS DB by Nucleotide ID:ENST00000612549Re-query CCDS DB by Protein ID:ENSP00000483491
Original member Current member NCBI NM_005015.5 NP_005006.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005015.5Link to Protein Sequence:NP_005006.4Re-query CCDS DB by Nucleotide ID:NM_005015Re-query CCDS DB by Protein ID:NP_005006Link to BLAST:NP_005006.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005006.4 435 Q15070-1 435 100% 0 0

Chromosomal Locations for CCDS 9573.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 22766702 22766764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22767248 22767409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22767958 22768171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22769791 22769934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22770193 22770278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22770461 22770625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22770805 22770909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22771018 22771180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22771268 22771348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22771434 22771558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGGCGATGGGACTAATGTGCGGACGCCGGGAGCTTCTGCGCTTGCTACAGTCCGGGCGTCGGGTCCACA
GCGTCGCAGGGCCCTCGCAATGGCTTGGGAAACCGCTGACCACACGGCTCCTATTCCCAGCAGCCCCGTG
CTGCTGTCGCCCACACTACCTCTTCCTTGCGGCTTCCGGCCCCCGCAGCCTCAGTACCTCTGCTATCTCT
TTTGCAGAAGTCCAGGTTCAGGCCCCTCCTGTTGTTGCTGCAACTCCCTCACCCACAGCAGTACCTGAGG
TGGCTTCTGGAGAGACTGCAGATGTAGTCCAAACTGCTGCAGAGCAGAGCTTCGCTGAACTGGGGCTGGG
GTCATACACCCCAGTGGGACTGATCCAGAATTTACTGGAATTTATGCATGTTGATCTGGGCCTACCTTGG
TGGGGGGCCATTGCTGCATGTACAGTCTTTGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCAGC
GAGAGGCAGCCAGGATCCACAATCACTTGCCAGAGATCCAGAAGTTTTCCAGTCGAATCAGAGAGGCCAA
GTTAGCAGGAGACCATATTGAGTATTACAAGGCTTCCTCGGAGATGGCACTTTACCAGAAAAAACATGGT
ATTAAACTCTATAAACCTCTCATTCTCCCTGTGACTCAGGCCCCAATCTTCATCTCCTTCTTCATTGCTT
TGAGAGAGATGGCCAACCTTCCTGTGCCCAGCCTGCAGACAGGTGGCCTCTGGTGGTTCCAGGATCTCAC
GGTATCCGATCCCATCTACATATTACCACTGGCAGTCACTGCTACAATGTGGGCTGTTCTTGAGCTAGGT
GCTGAGACAGGTGTGCAAAGTTCTGACCTTCAGTGGATGAGAAATGTCATCAGAATGATGCCCCTGATAA
CCTTGCCCATAACCATGCATTTCCCCACGGCAGTGTTTATGTACTGGCTCTCCTCCAATTTGTTTTCCCT
GGTCCAAGTATCCTGTCTCCGGATTCCAGCAGTACGCACTGTACTTAAAATCCCCCAGCGTGTTGTACAT
GACCTGGACAAATTACCTCCACGGGAAGGCTTCCTAGAGAGCTTCAAAAAAGGCTGGAAAAATGCTGAAA
TGACGCGTCAGCTGCGAGAGCGTGAACAACGCATGCGGAATCAGTTGGAGCTAGCAGCCAGGGGTCCTTT
ACGACAGACCTTTACCCACAACCCTCTCCTACAACCTGGAAAGGATAACCCTCCCAATATCCCTAGCAGC
AGCAGCAAACCAAAGTCAAAGTATCCCTGGCACGACACACTTGGCTGA

Translation (435 aa):
MAMGLMCGRRELLRLLQSGRRVHSVAGPSQWLGKPLTTRLLFPAAPCCCRPHYLFLAASGPRSLSTSAIS
FAEVQVQAPPVVAATPSPTAVPEVASGETADVVQTAAEQSFAELGLGSYTPVGLIQNLLEFMHVDLGLPW
WGAIAACTVFARCLIFPLIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALYQKKHG
IKLYKPLILPVTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDPIYILPLAVTATMWAVLELG
AETGVQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWLSSNLFSLVQVSCLRIPAVRTVLKIPQRVVH
DLDKLPPREGFLESFKKGWKNAEMTRQLREREQRMRNQLELAARGPLRQTFTHNPLLQPGKDNPPNIPSS
SSKPKSKYPWHDTLG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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