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Report for CCDS33362.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33362.2 Public Homo sapiens 2 FAM117B 24 110 108 CCDS HistoryNCBI Gene:150864Re-query CCDS DB by CCDS ID:33362.2See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 33362.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data. There are no human transcripts extending across the entire exon 1 of this representation, possibly because of cloning or sequencing difficulties over this highly GC-rich sequence, but it is supported by mouse NM_001037725.2 (CCDS14986.1) and AK154812.1, as well as by a few human transcripts that partially represent this exon (including AI523857.1, BF513253.1, AW015381.1).

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33362.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392238.3 ENSP00000376071.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392238.3Link to Ensembl Protein Viewer:ENSP00000376071.2Re-query CCDS DB by Nucleotide ID:ENST00000392238Re-query CCDS DB by Protein ID:ENSP00000376071
Original member Current member NCBI NM_173511.4 NP_775782.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173511.4Link to Protein Sequence:NP_775782.2Re-query CCDS DB by Nucleotide ID:NM_173511Re-query CCDS DB by Protein ID:NP_775782Link to BLAST:NP_775782.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775782.2 589 Q6P1L5-1 589 100% 0 0

Chromosomal Locations for CCDS 33362.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 202635188 202635788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202695881 202696032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202724917 202725009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202726250 202726363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202755538 202755681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202757213 202757438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202759233 202759353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202765446 202765764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGTCCCAGCGGGTGAGGCGCAATGGGTCCCCCACGCCGGCCGGCTCCCTTGGGGGTGGTGCGGTGGCCA
CGGCCGGGGGACCCGGGAGCCGCTTGCAGCCCATGAGGGCGACGGTTCCGTTCCAGCTGAAGCAGCAGCA
GCAGCAGCAACATGGCAGCCCCACGCGGAGCGGCGGCGGCGGCGGCGGCAACAACAACGGTGGCTGCTGT
GGTGGCGCCTCAGGCCCCGCAGGCGGCGGCGGCGGCGGTGGCCCGCGCACCGCCTCGCGCAGCACCAGCC
CCACGCGCGGCGGCGGGAACGCGGCCGCGCGCACCAGCCCCACGGTGGCCACGCAGACGGGCGCGTCCGC
GACGTCCACGCGAGGCACCAGCCCCACGCGCAGCGCCGCGCCTGGAGCTCGCGGGAGCCCCCCACGGCCG
CCGCCGCCGCCGCCGCTGCTGGGCACCGTGTCGTCGCCCAGCTCGTCGCCCACCCACCTGTGGACCGGCG
AGGTGAGCGCGGCCCCACCCCCAGCCCGCGTCCGGCATCGGAGGAGGTCTCCGGAGCAGAGCCGAAGCTC
GCCGGAGAAGAGGAGCCCCAGCGCCCCGGTTTGCAAAGCAGGTGACAAAACACGACAGCCTTCTTCAAGC
CCCTCCAGTATTATCCGACGCACTTCCTCCCTGGATACTCTTGCTGCACCGTATCTTGCTGGACACTGGC
CTCGGGATAGCCATGGGCAAGCTGCACCTTGCATGAGGGACAAAGCTACACAGACAGAGAGTGCATGGGC
TGAAGAATACTCTGAAAAGAAGAAAGGGTCTCACAAGCGCTCAGCATCTTGGGGCAGTACAGATCAACTT
AAGGAGATTGCAAAATTACGCCAGCAGTTGCAGAGAAGTAAACACAGCAGTCGGCATCATCGAGATAAAG
AAAGACAGTCTCCATTTCATGGCAACCATGCAGCTATTAACCAGTGTCAGGCTCCTGTTCCAAAGAGTGC
ACTTATTCCTGTAATTCCCATCACCAAATCAACAGGCTCCCGGTTCCGGAATAGCGTGGAAGGATTGAAT
CAGGAGATTGAAATAATAATTAAAGAGACTGGGGAAAAGGAAGAGCAACTTATACCGCAAGATATTCCAG
ATGGCCATCGTGCTCCACCCCCCCTTGTACAGAGAAGTAGCAGCACGCGCAGCATTGACACACAGACGCC
TGGTGGGGCAGACAGGGGAAGCAACAACAGCAGCCGTTCCCAGTCCGTGTCCCCAACATCGTTCCTCACC
ATTTCCAATGAAGGTAGCGAGGAGAGTCCTTGCTCAGCGGATGACCTGCTTGTTGATCCCAGAGATAAAG
AGAATGGGAACAATTCTCCTTTGCCCAAATATGCAACCTCACCAAAACCTAACAACAGTTATATGTTCAA
AAGGGAACCTCCTGAGGGCTGTGAAAGGGTCAAAGTCTTTGAGGAATGCTCGCCAAAACAGCTTCATGAA
ATCCCAGCCTTTTATTGTCCTGACAAAAACAAGGTGAATTTCATTCCTAAAAGTGGATCTGCTTTCTGCC
TCGTCAGCATCCTCAAGCCACTCCTTCCTACCCCGGATCTTACACTCAAGGGCTCTGGCCACAGCCTGAC
AGTCACCACTGGCATGACAACCACTCTGCTGCAGCCTATTGCTGTGGCCTCCCTGTCTACAAACACAGAG
CAAGACCGAGTCTCTCGAGGAACAAGTACAGTCATGCCATCAGCTTCTCTACTCCCACCACCAGAACCAA
TTGAGGAAGCTGAAGGATAG

Translation (589 aa):
MSQRVRRNGSPTPAGSLGGGAVATAGGPGSRLQPMRATVPFQLKQQQQQQHGSPTRSGGGGGGNNNGGCC
GGASGPAGGGGGGGPRTASRSTSPTRGGGNAAARTSPTVATQTGASATSTRGTSPTRSAAPGARGSPPRP
PPPPPLLGTVSSPSSSPTHLWTGEVSAAPPPARVRHRRRSPEQSRSSPEKRSPSAPVCKAGDKTRQPSSS
PSSIIRRTSSLDTLAAPYLAGHWPRDSHGQAAPCMRDKATQTESAWAEEYSEKKKGSHKRSASWGSTDQL
KEIAKLRQQLQRSKHSSRHHRDKERQSPFHGNHAAINQCQAPVPKSALIPVIPITKSTGSRFRNSVEGLN
QEIEIIIKETGEKEEQLIPQDIPDGHRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTSFLT
ISNEGSEESPCSADDLLVDPRDKENGNNSPLPKYATSPKPNNSYMFKREPPEGCERVKVFEECSPKQLHE
IPAFYCPDKNKVNFIPKSGSAFCLVSILKPLLPTPDLTLKGSGHSLTVTTGMTTTLLQPIAVASLSTNTE
QDRVSRGTSTVMPSASLLPPPEPIEEAEG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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