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Report for CCDS41936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41936.1 Public Homo sapiens 14 TINF2 24 110 108 CCDS HistoryNCBI Gene:26277Re-query CCDS DB by CCDS ID:41936.1Re-query CCDS DB by GeneID:26277See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41936.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267415.12 ENSP00000267415.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000267415.12Link to Ensembl Protein Viewer:ENSP00000267415.7Re-query CCDS DB by Nucleotide ID:ENST00000267415Re-query CCDS DB by Protein ID:ENSP00000267415
Original member Current member NCBI NM_001099274.3 NP_001092744.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099274.3Link to Protein Sequence:NP_001092744.1Re-query CCDS DB by Nucleotide ID:NM_001099274Re-query CCDS DB by Protein ID:NP_001092744Link to BLAST:NP_001092744.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092744.1 451 Q9BSI4-1 451 100% 0 0

Chromosomal Locations for CCDS 41936.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 24239797 24239931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24240064 24240155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24240263 24240330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24240419 24240875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24241020 24241116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24241204 24241311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24241675 24241776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24241890 24241994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24242141 24242332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGGCTACGCCCCTGGTGGCGGGTCCCGCAGCTCTACGCTTCGCCGCCGCGGCTAGCTGGCAGGTTGTGC
GC
GGACGCTGCGTGGAACATTTTCCGCGAGTACTGGAGTTTCTGCGATCTCTGCGCGCTGTTGCCCCTGG
C
TTGGTTCGCTACCGGCACCACGAACGCCTTTGTATGGGCCTAAAGGCCAAGGTGGTGGTGGAGCTGATC
CTG
CAGGGCCGGCCTTGGGCCCAAGTCCTGAAAGCCCTGAATCACCACTTTCCAGAATCTGGACCTATAG
TG
CGGGATCCCAAGGCTACAAAGCAGGATCTGAGGAAGATTTTGGAGGCACAGGAAACTTTTTACCAGCA
G
GTGAAGCAGCTGTCAGAGGCTCCTGTGGATTTGGCCTCGAAGCTGCAGGAACTTGAACAAGAGTATGGG
GAA
CCCTTTCTGGCTGCCATGGAAAAGCTGCTTTTTGAGTACTTGTGTCAGCTGGAGAAAGCACTGCCTA
CA
CCGCAGGCACAGCAGCTTCAGGATGTGCTGAGTTGGATGCAGCCTGGAGTCTCTATCACCTCTTCTCT
T
GCCTGGAGACAATATGGTGTGGACATGGGGTGGCTGCTTCCAGAGTGCTCTGTTACTGACTCAGTGAAC
CTG
GCTGAGCCCATGGAACAGAATCCTCCTCAGCAACAAAGACTAGCACTCCACAATCCCCTGCCAAAAG
CC
AAGCCTGGCACACATCTTCCTCAGGGACCATCTTCAAGGACGCACCCAGAACCTCTAGCTGGCCGACA
C
TTCAATCTGGCCCCTCTAGGCCGACGAAGAGTTCAGTCCCAATGGGCCTCCACTAGGGGAGGCCATAAG
GAG
CGCCCCACAGTCATGCTGTTTCCCTTTAGGAATCTCGGCTCACCAACCCAGGTCATATCTAAGCCTG
AG
AGCAAGGAAGAACATGCGATATACACAGCAGACCTAGCCATGGGCACAAGAGCAGCCTCCACTGGGAA
G
TCTAAGAGTCCATGCCAGACCCTGGGGGGAAGGGCTCTGAAGGAGAACCCAGTTGACTTGCCTGCCACA
GAG
CAAAAGGAGAATTGCTTGGATTGCTACATGGACCCCCTGAGACTATCATTATTACCTCCTAGGGCCA
GG
AAGCCAGTGTGTCCTCCGTCTCTGTGCAGCTCCGTCATTACCATAGGGGACTTGGTTTTAGACTCTGA
T
GAGGAAGAAAATGGCCAGGGGGAAGGAAAGGAATCTCTGGAAAACTATCAGAAGACAAAGTTTGACACC
TTG
ATACCCACTCTCTGTGAATACCTACCCCCTTCTGGCCACGGTGCCATACCTGTTTCTTCCTGTGACT
GT
AGAGACAGTTCTAGACCTTTGTGA


Translation (451 aa):
MATPLVAGPAALRFAAAASWQVVRGRCVEHFPRVLEFLRSLRAVAPGLVRYRHHERLCMGLKAKVVVELI
L
QGRPWAQVLKALNHHFPESGPIVRDPKA
TKQDLRKILEAQETFYQQVKQLSEAPVDLASKLQELEQEYG
E
PFLAAMEKLLFEYLCQLEKALPTPQAQQ
LQDVLSWMQPGVSITSSLAWRQYGVDMGWLLPECSVTDSVN
L
AEPMEQNPPQQQRLALHNPLPKAKPGTHLPQGPSSRTHPEPLAGRHFNLAPLGRRRVQSQWASTRGGHK
E
RPTVMLFPFRNLGSPTQVISKPESKEEHAIYTADLAMGTRAASTGKSKSPCQTLGGRALKENPVDLPAT
E
QK
ENCLDCYMDPLRLSLLPPRARKPVCPPSLCSSVITIGDLVLDSDEEENGQGEGKESLENYQKTKFDT
L
IPTLCEYLPPSGHGAIPVSSCDCRDSSRPL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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