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Report for CCDS5917.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
5917.1 |
Public |
Homo sapiens |
7 |
SLC4A2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:6522](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:5917.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:6522](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 5917.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000413384.7 |
ENSP00000405600.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000413384.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000405600.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000413384](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000405600](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000485713.5 |
ENSP00000419412.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000485713.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000419412.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000485713](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000419412](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001199692.3 |
NP_001186621.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001199692.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001186621.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001199692](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001186621](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001186621.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_003040.4 |
NP_003031.3 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_003040.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_003031.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_003040](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_003031](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_003031.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 5917.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3726 nt): ATGAGCAGCGCCCCTCGGCGCCCCGCCAAGGGCGCAGATTCTTTCTGTACGCCAGAGCCAGAGAGCTTGG GCCCTGGGACGCCTGGGTTCCCCGAGCAGGAGGAAGACGAACTTCACCGCACCCTGGGCGTGGAGCGGTT TGAGGAGATCCTACAGGAGGCCGGGTCTCGTGGAGGGGAGGAGCCAGGCCGCAGCTATGGGGAGGAAGAC TTTGAGTACCACCGCCAGTCCTCCCACCACATCCATCACCCACTGTCCACCCACCTGCCTCCGGATGCAC GCCGCCGCAAGACACCCCAGGGCCCAGGACGGAAGCCTCGAAGGCGCCCGGGAGCCTCCCCGACTGGAGA AACCCCGACCATTGAGGAGGGGGAGGAAGATGAGGATGAGGCCAGCGAGGCTGAGGGGGCCCGGGCTCTC ACTCAGCCGTCCCCTGTCTCCACACCCTCCTCGGTGCAGTTCTTTCTCCAAGAGGATGACAGTGCTGACC GGAAGGCAGAGAGGACCAGTCCATCTTCCCCTGCACCACTGCCCCACCAGGAGGCGACTCCTCGGGCCTC CAAAGGGGCCCAGGCTGGAACCCAGGTGGAGGAGGCGGAGGCGGAGGCGGTGGCGGTGGCCAGTGGCACT GCAGGGGGTGACGACGGGGGTGCCTCGGGGCGCCCCCTGCCCAAAGCCCAGCCTGGGCACCGCAGCTACA ACCTTCAGGAGAGGAGGCGCATCGGGAGCATGACTGGGGCTGAGCAGGCACTGCTGCCCCGGGTCCCCAC GGATGAGATTGAGGCCCAGACGCTGGCCACGGCCGACCTAGACCTCATGAAGAGTCACCGGTTTGAGGAC GTTCCTGGGGTGCGGCGGCACTTGGTGCGGAAGAATGCCAAAGGTTCCACACAGAGTGGCCGAGAAGGGC GGGAGCCTGGCCCCACACCTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGGTGTTTGTGGAGCT GAATGAGTTGCTCCTGGACAAAAACCAGGAGCCCCAGTGGCGGGAGACAGCTCGCTGGATCAAATTTGAA GAGGACGTGGAGGAGGAGACTGAGCGCTGGGGGAAGCCCCACGTGGCCTCCCTCTCCTTCCGCAGTCTCC TGGAGCTCCGCAGGACCCTGGCCCATGGGGCTGTGCTCTTGGATCTGGACCAGCAGACCCTGCCCGGAGT GGCCCACCAGGTGGTGGAGCAGATGGTCATCTCTGACCAGATCAAGGCCGAGGACAGGGCCAACGTGCTG CGGGCTCTGCTGTTGAAACACAGCCACCCAAGTGATGAGAAGGACTTCTCCTTCCCCCGCAACATCTCAG CTGGCTCCCTGGGCTCCCTGCTGGGGCATCACCATGGTCAGGGGGCTGAGAGTGACCCCCACGTCACCGA GCCTCTCATGGGAGGTGTTCCTGAGACCCGGCTGGAGGTGGAGCGAGAGCGTGAGCTGCCGCCTCCAGCA CCACCAGCTGGCATCACCCGCTCCAAGTCCAAGCACGAGCTGAAACTGCTGGAGAAGATTCCTGAGAATG CCGAGGCCACGGTGGTCCTTGTGGGCTGCGTGGAGTTCCTCTCCCGCCCCACCATGGCCTTTGTGCGGCT CCGGGAGGCTGTGGAGTTGGACGCAGTGTTGGAGGTGCCGGTGCCTGTGCGTTTCCTCTTCCTGCTGCTG GGCCCGAGTAGTGCCAACATGGACTACCACGAGATCGGCCGCTCCATCTCCACCCTCATGTCAGACAAGC AATTCCACGAGGCAGCCTACCTGGCTGACGAGCGGGAGGACCTGCTGACGGCCATCAACGCCTTCCTGGA CTGCAGCGTGGTGCTGCCGCCTTCAGAAGTGCAGGGCGAGGAGCTGCTGCGCTCTGTGGCCCACTTCCAG CGCCAGATGCTCAAGAAGCGAGAGGAGCAGGGCCGGCTGCTACCTACAGGGGCTGGGCTGGAGCCCAAAT CTGCCCAAGATAAGGCGCTCCTGCAGATGGTAGAGGCGGCAGGGGCAGCTGAAGATGATCCCCTTCGGCG GACGGGGCGGCCCTTTGGGGGGCTGATCCGAGATGTGCGGCGCCGCTATCCCCACTACCTGAGTGACTTC CGAGATGCACTTGACCCTCAGTGCCTGGCCGCAGTCATCTTCATCTACTTTGCCGCCCTGTCTCCTGCCA TCACCTTTGGGGGGCTGCTGGGAGAGAAGACGCAGGACCTGATAGGGGTGTCGGAGCTGATTATGTCCAC AGCGCTCCAGGGCGTGGTCTTCTGCCTGCTGGGTGCCCAGCCCCTGTTGGTGATCGGCTTCTCAGGGCCC CTGCTGGTCTTTGAGGAGGCCTTCTTCTCGTTCTGTAGCAGCAACCACCTGGAGTACCTGGTGGGCCGTG TGTGGATCGGCTTCTGGCTGGTGTTCCTGGCCCTGCTCATGGTGGCCCTGGAGGGGAGCTTCCTGGTCCG CTTCGTCTCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACTCATCTTCATCTATGAGACCTTC TACAAGCTGGTGAAGATCTTCCAGGAGCACCCCCTGCATGGCTGCTCAGCCTCCAACAGCTCAGAGGTGG ACGGCGGTGAGAACATGACATGGGCCGGGGCAAGACCCACGCTGGGGCCGGGCAACAGGAGCTTGGCTGG GCAGTCTGGGCAGGGGAAGCCCCGGGGCCAGCCCAACACGGCCCTGCTGTCGCTGGTGCTCATGGCCGGC ACCTTCTTCATCGCCTTCTTCCTGCGCAAATTCAAGAACAGCCGGTTCTTTCCTGGCCGGATCCGGCGGG TGATTGGGGACTTTGGGGTGCCCATCGCCATCCTCATCATGGTGCTTGTGGATTACAGTATTGAGGACAC CTATACCCAGAAGCTGAGCGTTCCCAGTGGATTCTCGGTGACTGCCCCAGAAAAGAGGGGCTGGGTCATC AACCCCCTGGGAGAGAAGAGCCCCTTCCCTGTGTGGATGATGGTTGCCAGCCTGCTGCCCGCCATCCTGG TCTTCATTCTCATCTTCATGGAGACACAGATCACCACGCTCATCATCTCCAAGAAGGAGCGCATGCTGCA GAAGGGCTCCGGCTTCCACCTGGACCTGCTGCTCATCGTGGCCATGGGCGGCATCTGTGCCCTCTTTGGC CTGCCCTGGTTGGCTGCTGCCACTGTCCGCTCTGTCACTCACGCCAACGCGCTCACTGTCATGAGCAAGG CTGTGGCACCTGGGGACAAGCCCAAGATTCAGGAAGTCAAGGAGCAGCGGGTGACGGGGCTGCTGGTTGC CCTGCTTGTGGGCCTCTCCATAGTTATCGGGGATCTGCTCCGGCAGATCCCCCTGGCCGTGCTCTTTGGA ATTTTCCTGTACATGGGAGTCACCTCCCTTAACGGGATCCAGTTCTATGAGCGGCTGCATCTGCTGCTCA TGCCGCCCAAACACCACCCAGATGTCACTTACGTCAAGAAGGTCCGGACCCTCCGTATGCACCTGTTCAC GGCCCTGCAGCTGCTCTGCCTGGCCCTGCTCTGGGCCGTCATGTCCACAGCTGCCTCCCTGGCCTTCCCC TTCATCCTCATCCTCACAGTGCCGCTCCGCATGGTGGTGCTCACCCGTATCTTCACCGACCGAGAGATGA AATGTCTGGATGCTAACGAGGCAGAGCCGGTGTTTGATGAGCGGGAGGGTGTGGACGAGTACAATGAGAT GCCCATGCCTGTGTAG
Translation (1241 aa): MSSAPRRPAKGADSFCTPEPESLGPGTPGFPEQEEDELHRTLGVERFEEILQEAGSRGGEEPGRSYGEED FEYHRQSSHHIHHPLSTHLPPDARRRKTPQGPGRKPRRRPGASPTGETPTIEEGEEDEDEASEAEGARAL TQPSPVSTPSSVQFFLQEDDSADRKAERTSPSSPAPLPHQEATPRASKGAQAGTQVEEAEAEAVAVASGT AGGDDGGASGRPLPKAQPGHRSYNLQERRRIGSMTGAEQALLPRVPTDEIEAQTLATADLDLMKSHRFED VPGVRRHLVRKNAKGSTQSGREGREPGPTPRARPRAPHKPHEVFVELNELLLDKNQEPQWRETARWIKFE EDVEEETERWGKPHVASLSFRSLLELRRTLAHGAVLLDLDQQTLPGVAHQVVEQMVISDQIKAEDRANVL RALLLKHSHPSDEKDFSFPRNISAGSLGSLLGHHHGQGAESDPHVTEPLMGGVPETRLEVERERELPPPA PPAGITRSKSKHELKLLEKIPENAEATVVLVGCVEFLSRPTMAFVRLREAVELDAVLEVPVPVRFLFLLL GPSSANMDYHEIGRSISTLMSDKQFHEAAYLADEREDLLTAINAFLDCSVVLPPSEVQGEELLRSVAHFQ RQMLKKREEQGRLLPTGAGLEPKSAQDKALLQMVEAAGAAEDDPLRRTGRPFGGLIRDVRRRYPHYLSDF RDALDPQCLAAVIFIYFAALSPAITFGGLLGEKTQDLIGVSELIMSTALQGVVFCLLGAQPLLVIGFSGP LLVFEEAFFSFCSSNHLEYLVGRVWIGFWLVFLALLMVALEGSFLVRFVSRFTQEIFAFLISLIFIYETF YKLVKIFQEHPLHGCSASNSSEVDGGENMTWAGARPTLGPGNRSLAGQSGQGKPRGQPNTALLSLVLMAG TFFIAFFLRKFKNSRFFPGRIRRVIGDFGVPIAILIMVLVDYSIEDTYTQKLSVPSGFSVTAPEKRGWVI NPLGEKSPFPVWMMVASLLPAILVFILIFMETQITTLIISKKERMLQKGSGFHLDLLLIVAMGGICALFG LPWLAAATVRSVTHANALTVMSKAVAPGDKPKIQEVKEQRVTGLLVALLVGLSIVIGDLLRQIPLAVLFG IFLYMGVTSLNGIQFYERLHLLLMPPKHHPDVTYVKKVRTLRMHLFTALQLLCLALLWAVMSTAASLAFP FILILTVPLRMVVLTRIFTDREMKCLDANEAEPVFDEREGVDEYNEMPMPV
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