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Report for CCDS43351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43351.1 Public Homo sapiens 5 MCC 24 110 108 CCDS HistoryNCBI Gene:4163Re-query CCDS DB by CCDS ID:43351.1Re-query CCDS DB by GeneID:4163See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43351.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000408903.7 ENSP00000386227.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000408903.7Link to Ensembl Protein Viewer:ENSP00000386227.3Re-query CCDS DB by Nucleotide ID:ENST00000408903Re-query CCDS DB by Protein ID:ENSP00000386227
Original member Current member NCBI NM_001085377.2 NP_001078846.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001085377.2Link to Protein Sequence:NP_001078846.2Re-query CCDS DB by Nucleotide ID:NM_001085377Re-query CCDS DB by Protein ID:NP_001078846Link to BLAST:NP_001078846.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078846.2 1019 P23508-2 1019 100% 0 0

Chromosomal Locations for CCDS 43351.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 113027302 113027482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113028934 113029056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113043530 113043630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113049093 113049299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113053725 113053959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113063984 113064167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113068080 113068183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113071094 113071234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113082860 113083008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113084101 113084190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113085164 113085310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113101739 113101945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113104192 113104355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113122684 113122826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113143218 113143360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113151309 113151422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113340519 113340730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113384968 113385212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113488245 113488414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3060 nt):
ATGATGGCGGCCGCGGCGGCAGCGGCTGCGGGGAGCTCCAGCAGCGGCGGCGGCGGCGGCGGCAGCGGCA
GCAGCAGCAGCAGCAGCGACACGTCCAGCACCGGCGAGGAGGAGAGGATGCGGCGCCTCTTCCAGACGTG
CGACGGCGACGGGGACGGATACATCAGCAGAAATGACTTGCTAATGGTCTGTCGCCAGCTGAATATGGAA
GAGTCTGTGGCTGAGATCATGAACCAGTTGGGAGCAGATGAAAATGGGAAGATTTCCTTTCAGGATTTCA
CAAGATGCCGCATGCAGCTTGTTCGAGAAATTAGGAAGGAGGAAGTAGATCTTTCTGCAAAGTCAGACAA
CTCCTGTACAAAGAAGCTGAGGGATAGAATTGCTTCCTGGCCCACGAGCAGTGACAACAGTTTGGGTGCC
TTATCAGCAGCCAGGGAGAGCTGGGAATACGACTCTGGTGCCAGGGACCTCCAGAGCCCGGATGTGCAGA
GCCAGTCAGCCCTCCAGAAGCTGCTCGAGTATGGCGGAAGCTCTTTGCATCAGCAGGCTGCTCTCCACAA
ACTGCTCACACAGTCCCCGCACATTGGCAACTCTGTAGGAGGAAGCTATCTAGAGCTGGCCAACACACTC
CATTCAGCAGCCCTGGCATCACTAAAGGGAGATATAGTGGAACTTAATAAACGTCTCCAGCAAACAGAGA
GGGAACGGGACCTTCTGGAAAAGAAATTGGCCAAGGCACAGTGCGAGCAGTCCCACCTCATGAGAGAGCA
TGAGGATGTCCAGGAGCGAACGACACTTCGCTATGAGGAACGCATCACAGAGCTCCACAGCGTCATTGCG
GAGCTCAACAAGAAGATAGACCGTCTGCAAGGCACCACCATCAGGGAGGAAGATGAGTACTCAGAACTGC
GATCAGAACTCAGCCAGAGCCAACACGAGGTCAACGAGGACTCTCGAAGCATGGACCAAGACCAGACCTC
TGTCTCTATCCCCGAAAACCAGTCTACCATGGTTACTGCTGACATGGACAACTGCAGTGACCTGAACTCA
GAACTGCAGAGGGTGCTGACAGGGCTGGAGAATGTTGTCTGCGGCAGGAAGAAGAGCAGCTGCAGCCTCT
CCGTGGCCGAGGTGGACAAGCACATTGAGCAGCTCACCACAGCCAGCGAGCACTGTGACCTGGCTATTAA
GACAGTCGAGGAGATTGAGGGGGTGCTTGGCCGGGACCTGTATCCCAACCTGGCTGAAGAGAGGTCTCGG
TGGGAGAAGGAGCTGGCTGGGCTGAGGGAAGAGAATGAGAGCCTGACTGCCATGCTGTGCAGCAAAGAGG
AAGAACTGAACCGGACTAAGGCCACCATGAATGCCATCCGGGAAGAGCGGGACCGGCTCCGGAGGAGGGT
CAGAGAGCTTCAAACTCGACTACAGAGCGTGCAGGCCACAGGTCCCTCCAGCCCTGGCCGCCTCACTTCC
ACCAACCGCCCGATTAACCCCAGCACTGGGGAGCTGAGCACAAGCAGCAGCAGCAATGACATTCCCATCG
CCAAGATTGCTGAGAGGGTGAAGCTATCAAAGACAAGGTCCGAATCGTCATCATCTGATCGGCCAGTCCT
GGGCTCAGAAATCAGTAGCATAGGGGTATCCAGCAGTGTGGCTGAACACCTGGCCCACTCACTTCAGGAC
TGCTCCAATATCCAAGAGATTTTCCAAACACTCTACTCACACGGATCTGCCATCTCAGAAAGCAAGATTA
GAGAGTTTGAGGTGGAAACAGAACGGCTGAATAGCCGGATTGAGCACCTCAAATCCCAAAATGACCTCCT
GACCATAACCTTGGAGGAATGTAAAAGCAATGCCGAGAGGATGAGCATGCTGGTGGGAAAATACGAATCC
AATGCCACAGCGCTGAGGCTGGCCTTGCAGTACAGCGAGCAGTGCATCGAAGCCTACGAACTCCTCCTGG
CGCTGGCAGAGAGTGAGCAGAGCCTCATCCTGGGGCAGTTCCGAGCGGCGGGCGTGGGGTCCTCCCCTGG
AGACCAGTCGGGGGATGAAAACATCACTCAGATGCTCAAGCGAGCTCATGACTGCCGGAAGACAGCTGAG
AACGCTGCCAAGGCCCTGCTCATGAAGCTGGACGGCAGCTGTGGGGGAGCCTTTGCCGTGGCCGGCTGCA
GCGTGCAGCCCTGGGAGAGCCTTTCCTCCAACAGCCACACCAGCACAACCAGCTCCACAGCCAGTAGTTG
CGACACCGAGTTCACTAAAGAAGACGAGCAGAGGCTGAAGGATTATATCCAGCAGCTCAAGAATGACAGG
GCTGCGGTCAAGCTGACCATGCTGGAGCTGGAAAGCATCCACATCGATCCTCTCAGCTATGACGTCAAGC
CTCGGGGAGACAGCCAGAGGCTGGATCTGGAAAACGCAGTGCTTATGCAGGAGCTCATGGCCATGAAGGA
GGAGATGGCCGAGTTGAAGGCCCAGCTCTACCTACTGGAGAAAGAGAAGAAGGCCCTGGAGCTGAAGCTG
AGCACGCGGGAGGCCCAGGAGCAGGCCTACCTGGTGCACATTGAGCACCTGAAGTCCGAGGTGGAGGAGC
AGAAGGAGCAGCGGATGCGATCCCTCAGCTCCACCAGCAGCGGCAGCAAAGACAAACCTGGCAAGGAGTG
TGCTGATGCTGCCTCCCCAGCTCTGTCCCTAGCCGAACTCAGGACAACGTGCAGCGAGAATGAGCTGGCT
GCGGAGTTCACCAACGCCATTCGTCGAGAAAAGAAGTTGAAGGCCAGAGTTCAAGAGCTGGTGAGTGCCT
TGGAGAGACTCACCAAGAGCAGTGAAATCCGACATCAGCAATCTGCAGAGTTCGTGAATGATCTAAAGCG
GGCCAACAGCAACCTGGTGGCTGCCTATGAGAAAGCAAAGAAAAAGCATCAAAACAAACTGAAGAAGTTA
GAGTCGCAGATGATGGCCATGGTGGAGAGACATGAGACCCAAGTGAGGATGCTCAAGCAAAGAATAGCTC
TGCTAGAGGAGGAGAACTCCAGGCCACACACCAATGAAACTTCGCTTTAA

Translation (1019 aa):
MMAAAAAAAAGSSSSGGGGGGSGSSSSSSDTSSTGEEERMRRLFQTCDGDGDGYISRNDLLMVCRQLNME
ESVAEIMNQLGADENGKISFQDFTRCRMQLVREIRKEEVDLSAKSDNSCTKKLRDRIASWPTSSDNSLGA
LSAARESWEYDSGARDLQSPDVQSQSALQKLLEYGGSSLHQQAALHKLLTQSPHIGNSVGGSYLELANTL
HSAALASLKGDIVELNKRLQQTERERDLLEKKLAKAQCEQSHLMREHEDVQERTTLRYEERITELHSVIA
ELNKKIDRLQGTTIREEDEYSELRSELSQSQHEVNEDSRSMDQDQTSVSIPENQSTMVTADMDNCSDLNS
ELQRVLTGLENVVCGRKKSSCSLSVAEVDKHIEQLTTASEHCDLAIKTVEEIEGVLGRDLYPNLAEERSR
WEKELAGLREENESLTAMLCSKEEELNRTKATMNAIREERDRLRRRVRELQTRLQSVQATGPSSPGRLTS
TNRPINPSTGELSTSSSSNDIPIAKIAERVKLSKTRSESSSSDRPVLGSEISSIGVSSSVAEHLAHSLQD
CSNIQEIFQTLYSHGSAISESKIREFEVETERLNSRIEHLKSQNDLLTITLEECKSNAERMSMLVGKYES
NATALRLALQYSEQCIEAYELLLALAESEQSLILGQFRAAGVGSSPGDQSGDENITQMLKRAHDCRKTAE
NAAKALLMKLDGSCGGAFAVAGCSVQPWESLSSNSHTSTTSSTASSCDTEFTKEDEQRLKDYIQQLKNDR
AAVKLTMLELESIHIDPLSYDVKPRGDSQRLDLENAVLMQELMAMKEEMAELKAQLYLLEKEKKALELKL
STREAQEQAYLVHIEHLKSEVEEQKEQRMRSLSSTSSGSKDKPGKECADAASPALSLAELRTTCSENELA
AEFTNAIRREKKLKARVQELVSALERLTKSSEIRHQQSAEFVNDLKRANSNLVAAYEKAKKKHQNKLKKL
ESQMMAMVERHETQVRMLKQRIALLEEENSRPHTNETSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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