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Report for CCDS4168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4168.1 Public Homo sapiens 5 VDAC1 24 110 108 CCDS HistoryNCBI Gene:7416Re-query CCDS DB by CCDS ID:4168.1Re-query CCDS DB by GeneID:7416See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4168.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265333.8 ENSP00000265333.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265333.8Link to Ensembl Protein Viewer:ENSP00000265333.3Re-query CCDS DB by Nucleotide ID:ENST00000265333Re-query CCDS DB by Protein ID:ENSP00000265333
Original member Current member EBI ENST00000395044.7 ENSP00000378484.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395044.7Link to Ensembl Protein Viewer:ENSP00000378484.3Re-query CCDS DB by Nucleotide ID:ENST00000395044Re-query CCDS DB by Protein ID:ENSP00000378484
Original member Current member EBI ENST00000395047.6 ENSP00000378487.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395047.6Link to Ensembl Protein Viewer:ENSP00000378487.2Re-query CCDS DB by Nucleotide ID:ENST00000395047Re-query CCDS DB by Protein ID:ENSP00000378487
Original member Current member NCBI NM_001401008.1 NP_001387937.1 Accepted alive Link to Nucleotide Sequence:NM_001401008.1Link to Protein Sequence:NP_001387937.1Re-query CCDS DB by Nucleotide ID:NM_001401008Re-query CCDS DB by Protein ID:NP_001387937Link to BLAST:NP_001387937.1
Original member Current member NCBI NM_001401009.1 NP_001387938.1 Accepted alive Link to Nucleotide Sequence:NM_001401009.1Link to Protein Sequence:NP_001387938.1Re-query CCDS DB by Nucleotide ID:NM_001401009Re-query CCDS DB by Protein ID:NP_001387938Link to BLAST:NP_001387938.1
Original member Current member NCBI NM_001401010.1 NP_001387939.1 Accepted alive Link to Nucleotide Sequence:NM_001401010.1Link to Protein Sequence:NP_001387939.1Re-query CCDS DB by Nucleotide ID:NM_001401010Re-query CCDS DB by Protein ID:NP_001387939Link to BLAST:NP_001387939.1
Original member Current member NCBI NM_001401011.1 NP_001387940.1 Accepted alive Link to Nucleotide Sequence:NM_001401011.1Link to Protein Sequence:NP_001387940.1Re-query CCDS DB by Nucleotide ID:NM_001401011Re-query CCDS DB by Protein ID:NP_001387940Link to BLAST:NP_001387940.1
Original member Current member NCBI NM_001401016.1 NP_001387945.1 Accepted alive Link to Nucleotide Sequence:NM_001401016.1Link to Protein Sequence:NP_001387945.1Re-query CCDS DB by Nucleotide ID:NM_001401016Re-query CCDS DB by Protein ID:NP_001387945Link to BLAST:NP_001387945.1
Original member Current member NCBI NM_001401017.1 NP_001387946.1 Accepted alive Link to Nucleotide Sequence:NM_001401017.1Link to Protein Sequence:NP_001387946.1Re-query CCDS DB by Nucleotide ID:NM_001401017Re-query CCDS DB by Protein ID:NP_001387946Link to BLAST:NP_001387946.1
Original member Current member NCBI NM_001401018.1 NP_001387947.1 Accepted alive Link to Nucleotide Sequence:NM_001401018.1Link to Protein Sequence:NP_001387947.1Re-query CCDS DB by Nucleotide ID:NM_001401018Re-query CCDS DB by Protein ID:NP_001387947Link to BLAST:NP_001387947.1
Original member Current member NCBI NM_001401020.1 NP_001387949.1 Accepted alive Link to Nucleotide Sequence:NM_001401020.1Link to Protein Sequence:NP_001387949.1Re-query CCDS DB by Nucleotide ID:NM_001401020Re-query CCDS DB by Protein ID:NP_001387949Link to BLAST:NP_001387949.1
Original member Current member NCBI NM_001401021.1 NP_001387950.1 Accepted alive Link to Nucleotide Sequence:NM_001401021.1Link to Protein Sequence:NP_001387950.1Re-query CCDS DB by Nucleotide ID:NM_001401021Re-query CCDS DB by Protein ID:NP_001387950Link to BLAST:NP_001387950.1
Original member Current member NCBI NM_001401022.1 NP_001387951.1 Accepted alive Link to Nucleotide Sequence:NM_001401022.1Link to Protein Sequence:NP_001387951.1Re-query CCDS DB by Nucleotide ID:NM_001401022Re-query CCDS DB by Protein ID:NP_001387951Link to BLAST:NP_001387951.1
Original member Current member NCBI NM_001401023.1 NP_001387952.1 Accepted alive Link to Nucleotide Sequence:NM_001401023.1Link to Protein Sequence:NP_001387952.1Re-query CCDS DB by Nucleotide ID:NM_001401023Re-query CCDS DB by Protein ID:NP_001387952Link to BLAST:NP_001387952.1
Original member Current member NCBI NM_003374.3 NP_003365.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003374.3Link to Protein Sequence:NP_003365.1Re-query CCDS DB by Nucleotide ID:NM_003374Re-query CCDS DB by Protein ID:NP_003365Link to BLAST:NP_003365.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001387937.1 283 P21796 283 100% 0 0
NP_001387938.1 283 P21796 283 100% 0 0
NP_001387939.1 283 P21796 283 100% 0 0
NP_001387940.1 283 P21796 283 100% 0 0
NP_001387945.1 283 P21796 283 100% 0 0
NP_001387946.1 283 P21796 283 100% 0 0
NP_001387947.1 283 P21796 283 100% 0 0
NP_001387949.1 283 P21796 283 100% 0 0
NP_001387950.1 283 P21796 283 100% 0 0
NP_001387951.1 283 P21796 283 100% 0 0
NP_001387952.1 283 P21796 283 100% 0 0
NP_003365.1 283 P21796 283 100% 0 0

Chromosomal Locations for CCDS 4168.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 133972771 133972862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133973791 133973848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133975871 133976021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133980729 133980956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133990855 133990907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133991002 133991154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133992306 133992355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133992946 133993012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGGCTGTGCCACCCACGTATGCCGATCTTGGCAAATCTGCCAGGGATGTCTTCACCAAGGGCTATGGAT
TTGGCTTAATAAAGCTTGATTTGAAAACAAAATCTGAGAATGGATTGGAATTTACAAGCTCAGGCTCAGC
CAACACTGAGACCACCAAAGTGACGGGCAGTCTGGAAACCAAGTACAGATGGACTGAGTACGGCCTGACG
TTTACAGAGAAATGGAATACCGACAATACACTAGGCACCGAGATTACTGTGGAAGATCAGCTTGCACGTG
GACTGAAGCTGACCTTCGATTCATCCTTCTCACCTAACACTGGGAAAAAAAATGCTAAAATCAAGACAGG
GTACAAGCGGGAGCACATTAACCTGGGCTGCGACATGGATTTCGACATTGCTGGGCCTTCCATCCGGGGT
GCTCTGGTGCTAGGTTACGAGGGCTGGCTGGCCGGCTACCAGATGAATTTTGAGACTGCAAAATCCCGAG
TGACCCAGAGCAACTTTGCAGTTGGCTACAAGACTGATGAATTCCAGCTTCACACTAATGTGAATGACGG
GACAGAGTTTGGCGGCTCCATTTACCAGAAAGTGAACAAGAAGTTGGAGACCGCTGTCAATCTTGCCTGG
ACAGCAGGAAACAGTAACACGCGCTTCGGAATAGCAGCCAAGTATCAGATTGACCCTGACGCCTGCTTCT
CGGCTAAAGTGAACAACTCCAGCCTGATAGGTTTAGGATACACTCAGACTCTAAAGCCAGGTATTAAACT
GACACTGTCAGCTCTTCTGGATGGCAAGAACGTCAATGCTGGTGGCCACAAGCTTGGTCTAGGACTGGAA
TTTCAAGCATAA

Translation (283 aa):
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEYGLT
FTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDMDFDIAGPSIRG
ALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAW
TAGNSNTRFGIAAKYQIDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLE
FQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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