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Report for CCDS33451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33451.1 Public Homo sapiens 20 GINS1 24 110 108 CCDS HistoryNCBI Gene:9837Re-query CCDS DB by CCDS ID:33451.1Re-query CCDS DB by GeneID:9837See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33451.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262460.5 ENSP00000262460.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262460.5Link to Ensembl Protein Viewer:ENSP00000262460.4Re-query CCDS DB by Nucleotide ID:ENST00000262460Re-query CCDS DB by Protein ID:ENSP00000262460
Original member Current member EBI ENST00000696874.1 ENSP00000512943.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696874.1Link to Ensembl Protein Viewer:ENSP00000512943.1Re-query CCDS DB by Nucleotide ID:ENST00000696874Re-query CCDS DB by Protein ID:ENSP00000512943
Original member Current member NCBI NM_021067.5 NP_066545.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021067.5Link to Protein Sequence:NP_066545.3Re-query CCDS DB by Nucleotide ID:NM_021067Re-query CCDS DB by Protein ID:NP_066545Link to BLAST:NP_066545.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066545.3 196 Q14691 196 100% 0 0

Chromosomal Locations for CCDS 33451.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 25407821 25407895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25413790 25413854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25417104 25417202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25418105 25418195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25425211 25425327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25441702 25441776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 25445923 25445991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGTTCTGCGAAAAAGCCATGGAACTGATCCGCGAGCTGCATCGCGCGCCCGAAGGGCAACTGCCTGCCT
TCAACGAGGATGGACTCAGACAAGTTCTGGAGGAGATGAAAGCTTTGTATGAACAAAACCAGTCTGATGT
GAATGAAGCAAAGTCAGGTGGACGAAGTGATTTGATACCAACTATCAAATTTCGACACTGTTCTCTGTTA
AGAAATCGACGCTGCACTGTAGCATACCTGTATGACCGCTTGCTTCGGATCAGAGCACTCAGATGGGAAT
ATGGTAGCGTCTTGCCAAATGCATTACGATTTCACATGGCTGCTGAAGAAATGGAGTGGTTTAATAATTA
TAAAAGATCTCTTGCTACTTATATGAGGTCACTGGGAGGAGATGAAGGTTTGGACATTACACAGGATATG
AAACCACCAAAAAGCCTATATATTGAAGTCCGGTGTCTAAAAGACTATGGAGAATTTGAAGTTGATGATG
GCACTTCAGTCCTATTAAAAAAAAATAGCCAGCACTTTTTACCTCGATGGAAATGTGAGCAGCTGATCAG
ACAAGGAGTCCTGGAGCACATCCTGTCATGA

Translation (196 aa):
MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLL
RNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDM
KPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRWKCEQLIRQGVLEHILS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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