NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2063.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2063.1 Public Homo sapiens 2 MFSD9 24 110 108 CCDS HistoryNCBI Gene:84804Re-query CCDS DB by CCDS ID:2063.1Re-query CCDS DB by GeneID:84804See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2063.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258436.10 ENSP00000258436.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258436.10Link to Ensembl Protein Viewer:ENSP00000258436.5Re-query CCDS DB by Nucleotide ID:ENST00000258436Re-query CCDS DB by Protein ID:ENSP00000258436
Original member Current member NCBI NM_032718.5 NP_116107.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032718.5Link to Protein Sequence:NP_116107.3Re-query CCDS DB by Nucleotide ID:NM_032718Re-query CCDS DB by Protein ID:NP_116107Link to BLAST:NP_116107.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116107.3 474 Q8NBP5 474 100% 0 0

Chromosomal Locations for CCDS 2063.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 102718420 102719207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102723700 102723909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102726845 102726974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102731025 102731068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102732322 102732409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102736646 102736810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGGAGCTTGGGGGTCACTGGGACATGAACTCGGCCCCGAGGCTGGTCTCGGAGACCGCAGAGCGGAAAC
AGGAGCAGAAGACAGGAACCGAGGCGGAGGCTGCCGACTCCGGTGCCGTCGGAGCCCGCCGCTTCCTGCT
CTGTCTCTACTTGGTGGGCTTCTTGGATTTGTTTGGTGTCAGCATGGTTGTGCCTTTATTGAGCCTTCAT
GTCAAGTCCCTTGGAGCAAGTCCAACAGTTGCTGGAATAGTAGGCTCCTCCTATGGCATTTTGCAACTCT
TTTCTAGCACATTGGTGGGCTGCTGGAGCGATGTAGTGGGAAGACGGTCTTCCTTGCTGGCATGCATTCT
ACTCAGTGCTCTGGGCTATCTCCTTCTCGGAGCAGCCACCAATGTGTTTCTGTTTGTCCTGGCTAGAGTC
CCGGCAGGTATTTTTAAACACACTCTCTCCATCTCAAGGGCTCTACTTTCTGATGTGGTTCCAGAGAAGG
AACGGCCGCTTGTAATCGGACACTTCAACACAGCCTCCGGTGTGGGCTTCATCTTGGGCCCCGTGGTCGG
TGGCTATCTCACTGAATTAGAGGATGGGTTTTATCTCACAGCCTTCATCTGCTTTTTGGTCTTCATTCTC
AATGCTGGTCTCGTTTGGTTCTTTCCATGGAGGGAAGCAAAACCGGGCAGTACAGAGAAGGGCCTGCCAT
TGCGAAAGACCCATGTGCTGTTGGGAAGGAGCCATGACACAGTGCAGGAGGCAGCCACCAGCCGCAGAGC
CAGGGCCAGCAAGAAGACTGCCCAGCCCTGGGTCGAAGTAGTGTTGGCCTTGCGGAACATGAAGAACCTG
CTGTTTTCCGAAATGTGGGACATATTTCTGGTGCGCTTGCTGATGGCCATGGCAGTCATGCTGTACTACA
GTAACTTTGTCCTGGCCCTGGAGGAGCGCTTTGGGGTGCGGCCCAAGGTGACAGGCTACCTCATCAGTTA
CAGCAGCATGCTGGGGGCCGTGGCCGGCCTTGCCCTGGGGCCAATCCTACGGCTGTACAAGCACAACTCG
CAGGCACTGCTGCTGCATTCCAGCATACTCACCTGCACACTGCTGCTGCTCTACTCCTTGGCCCCCACCA
TGGGTGCAGTTGTCCTCTCCTCCACTCTCCTGTCCTTCTCCACTGCCATTGGCAGGACGTGCATCACGGA
CCTCCAGCTGACTGTGGGCGGGGCCCAGGCCAGCGGCACCCTTATTGGCGTGGGGCAGTCTGTGACTGCA
GTGGGCCGCATCATCGCCCCTCTCCTCTCGGGGGTTGCCCAGGAGGTCAGCCCTTGCGGCCCCCCCAGCC
TGGGCGCTGTGTTAGCCTTAGTGGCCATTTTCATAATGTCTCTAAACAAGCGACACTCTAGTGGTGATGG
GAATAGTAAATTAAAAAGTGAGTAG

Translation (474 aa):
MELGGHWDMNSAPRLVSETAERKQEQKTGTEAEAADSGAVGARRFLLCLYLVGFLDLFGVSMVVPLLSLH
VKSLGASPTVAGIVGSSYGILQLFSSTLVGCWSDVVGRRSSLLACILLSALGYLLLGAATNVFLFVLARV
PAGIFKHTLSISRALLSDVVPEKERPLVIGHFNTASGVGFILGPVVGGYLTELEDGFYLTAFICFLVFIL
NAGLVWFFPWREAKPGSTEKGLPLRKTHVLLGRSHDTVQEAATSRRARASKKTAQPWVEVVLALRNMKNL
LFSEMWDIFLVRLLMAMAVMLYYSNFVLALEERFGVRPKVTGYLISYSSMLGAVAGLALGPILRLYKHNS
QALLLHSSILTCTLLLLYSLAPTMGAVVLSSTLLSFSTAIGRTCITDLQLTVGGAQASGTLIGVGQSVTA
VGRIIAPLLSGVAQEVSPCGPPSLGAVLALVAIFIMSLNKRHSSGDGNSKLKSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH