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Report for CCDS41504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41504.1 Public Homo sapiens 10 TMEM72 24 110 108 CCDS HistoryNCBI Gene:643236Re-query CCDS DB by CCDS ID:41504.1Re-query CCDS DB by GeneID:643236See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41504.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389583.5 ENSP00000374234.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389583.5Link to Ensembl Protein Viewer:ENSP00000374234.4Re-query CCDS DB by Nucleotide ID:ENST00000389583Re-query CCDS DB by Protein ID:ENSP00000374234
Original member Current member NCBI NM_001123376.3 NP_001116848.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001123376.3Link to Protein Sequence:NP_001116848.1Re-query CCDS DB by Nucleotide ID:NM_001123376Re-query CCDS DB by Protein ID:NP_001116848Link to BLAST:NP_001116848.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116848.1 275 A0PK05-1 275 100% 0 0

Chromosomal Locations for CCDS 41504.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 44911513 44911582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 44927921 44927987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 44931998 44932069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 44933637 44933776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 44934656 44935134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGCAGCTCCAGGTGTTCTGGACTGGGCTGGAATACACCTGCCGGCTCCTGGGCATCACCACTGCTGCAG
TGTTGATCGGCGTGGGCACTGAGACCTTCCTCCAGGGCCAGTTCAAAAGCCTGGCTTTCTATCTGCTGTT
TACAGGAGCCGCTGTCTCCATATGTGAAGGGGCCTACTTTGTGGCTCAGCTGCTGGCCATCTGCTTCCAG
TGTCAACCAGGGTCCCTGGCAGACAGAGTAAGGGAGAAAGCCCACTGGCTGGGCTGCTTCCAGAAGTTCC
TGGCCTACCTGCTGCTGTCGGTGGCCTGCTTCCTCCACCCGGTCCTGGTCTGGCACGTGACCATCCCAGG
CTCCATGCTCATCATCACCGGCCTGGCCTACTTCCTTCTGAGCAAGCGGAAGAAGAGGAAAGCTGCCCCC
GAGGTGCTGGCCTCCCCAGAGCAGTACACAGACCCCTCTAGCAGCGCTGTGAGCACCACCGGCTCTGGGG
ACACAGAGCAAACCTACACTTTCCATGGGGCCCTCAAGGAGGGGCCCAGCTCCCTTTTCATCCACATGAA
GAGTATCCTGAAGGGGACTAAGAAGCCCAGTGCCCTCCAGCCCCCCAACACCCTGATGGAGCTGAGCCTG
GAGCCAGCCGACTCCCTGGCCAAGAAGAAGCAGGTGCACTTTGAAGACAACTTGGTCCGCATAGTCCCCT
CCCTCGCCGAAGGTCTGGATGATGGGGACAGTGAGCCAGAGGAGACCACCTCTGACACGACACCCATCAT
TCCCCCTCCCCAGGCCCCACTCTTCCTGTCATCTCTTACAGCCACCGGCCTGTTCTGA

Translation (275 aa):
MQLQVFWTGLEYTCRLLGITTAAVLIGVGTETFLQGQFKSLAFYLLFTGAAVSICEGAYFVAQLLAICFQ
CQPGSLADRVREKAHWLGCFQKFLAYLLLSVACFLHPVLVWHVTIPGSMLIITGLAYFLLSKRKKRKAAP
EVLASPEQYTDPSSSAVSTTGSGDTEQTYTFHGALKEGPSSLFIHMKSILKGTKKPSALQPPNTLMELSL
EPADSLAKKKQVHFEDNLVRIVPSLAEGLDDGDSEPEETTSDTTPIIPPPQAPLFLSSLTATGLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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