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Report for CCDS59330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59330.1 Public Homo sapiens 19 NFIC 24 110 108 CCDS HistoryNCBI Gene:4782Re-query CCDS DB by CCDS ID:59330.1Re-query CCDS DB by GeneID:4782See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59330.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000443272.3 ENSP00000396843.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000443272.3Link to Ensembl Protein Viewer:ENSP00000396843.2Re-query CCDS DB by Nucleotide ID:ENST00000443272Re-query CCDS DB by Protein ID:ENSP00000396843
Original member Current member NCBI NM_001245002.2 NP_001231931.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001245002.2Link to Protein Sequence:NP_001231931.1Re-query CCDS DB by Nucleotide ID:NM_001245002Re-query CCDS DB by Protein ID:NP_001231931Link to BLAST:NP_001231931.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001231931.1 508 P08651-1 508 100% 0 0

Chromosomal Locations for CCDS 59330.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3366637 3366666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3381712 3382243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3425106 3425177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3433518 3433592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3434277 3434400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3435083 3435207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3449014 3449139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3452482 3452666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3453763 3453916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3456550 3456635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3462752 3462769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGTATTCGTCCCCGCTCTGCCTCACCCAGGATGAGTTCCACCCGTTCATCGAGGCCCTGCTGCCTCACG
TCCGCGCCTTCGCCTACACCTGGTTCAACCTGCAGGCGCGGAAGCGCAAGTACTTCAAGAAGCACGAGAA
GCGGATGTCGAAGGACGAGGAGCGTGCGGTCAAGGACGAGCTGCTGGGCGAGAAGCCCGAGGTCAAGCAG
AAGTGGGCGTCGCGGCTGCTGGCCAAGCTGCGCAAGGACATCCGGCCCGAGTGCCGCGAGGACTTCGTGC
TGAGCATCACCGGCAAGAAGGCGCCGGGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATGCGGCG
CATCGACTGTCTCCGGCAGGCGGACAAGGTGTGGCGGCTGGACCTGGTCATGGTCATCCTGTTCAAGGGC
ATCCCGCTGGAGAGCACCGACGGCGAGCGCCTGGTCAAGGCTGCGCAGTGCGGTCACCCGGTCCTGTGCG
TGCAGCCGCACCACATTGGCGTGGCCGTCAAGGAGCTGGACCTCTACCTGGCCTACTTCGTGCGTGAGCG
AGATGCAGAGCAAAGCGGCAGTCCCCGGACAGGGATGGGCTCTGACCAGGAGGACAGCAAGCCCATCACG
CTGGACACGACCGACTTCCAGGAGAGCTTTGTCACCTCCGGCGTGTTCAGCGTCACTGAGCTCATCCAAG
TGTCCCGGACACCCGTGGTGACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGGGCACCTGGC
ATACGACCTGAACCCAGCCAGCACTGGCCTCAGAAGAACGCTGCCCAGCACCTCCTCCAGTGGGAGCAAG
CGGCACAAATCGGGCTCGATGGAGGAAGACGTGGACACGAGCCCTGGCGGCGATTACTACACTTCGCCCA
GCTCGCCCACGAGTAGCAGCCGCAACTGGACGGAGGACATGGAAGGAGGCATCTCGTCCCCGGTGAAGAA
GACAGAGATGGACAAGTCACCATTCAACAGCCCGTCCCCCCAGGACTCTCCCCGCCTCTCCAGCTTCACC
CAGCACCACCGGCCCGTCATCGCCGTGCACAGCGGGATCGCCCGGAGCCCACACCCGTCCTCCGCTCTGC
ATTTCCCTACGACGTCCATCCTACCCCAGACGGCCTCCACCTACTTCCCCCACACGGCCATCCGCTACCC
ACCTCATCTCAACCCCCAGGACCCGCTCAAAGATCTTGTCTCGCTGGCCTGCGACCCAGCCAGCCAGCAA
CCTGGACCGTTAAATGGAAGTGGTCAGCTCAAAATGCCCAGCCACTGCCTTTCTGCTCAGATGCTGGCAC
CTCCGCCCCCGGGGCTGCCACGGCTGGCGCTCCCCCCTGCCACCAAACCCGCCACCACCTCCGAGGGAGG
AGCCACGTCGCCGACCTCGCCTTCCTACTCTCCGCCCGACACGTCCCCTGCAAACCGTTCCTTTGTGGGA
TTAGGACCAAGGGATCCTGCGGGCATTTATCAGGCACAGTCCTGGTATCTGGGATAG

Translation (508 aa):
MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQ
KWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKG
IPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFVRERDAEQSGSPRTGMGSDQEDSKPIT
LDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSK
RHKSGSMEEDVDTSPGGDYYTSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFT
QHHRPVIAVHSGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
PGPLNGSGQLKMPSHCLSAQMLAPPPPGLPRLALPPATKPATTSEGGATSPTSPSYSPPDTSPANRSFVG
LGPRDPAGIYQAQSWYLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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