NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3328.1 Public Homo sapiens 3 BDH1 24 110 108 CCDS HistoryNCBI Gene:622Re-query CCDS DB by CCDS ID:3328.1Re-query CCDS DB by GeneID:622See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3328.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358186.6 ENSP00000350914.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358186.6Link to Ensembl Protein Viewer:ENSP00000350914.2Re-query CCDS DB by Nucleotide ID:ENST00000358186Re-query CCDS DB by Protein ID:ENSP00000350914
Original member Current member EBI ENST00000392378.6 ENSP00000376183.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392378.6Link to Ensembl Protein Viewer:ENSP00000376183.2Re-query CCDS DB by Nucleotide ID:ENST00000392378Re-query CCDS DB by Protein ID:ENSP00000376183
Original member Current member EBI ENST00000392379.6 ENSP00000376184.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392379.6Link to Ensembl Protein Viewer:ENSP00000376184.1Re-query CCDS DB by Nucleotide ID:ENST00000392379Re-query CCDS DB by Protein ID:ENSP00000376184
Original member Current member NCBI NM_004051.5 NP_004042.1 Accepted alive Link to Nucleotide Sequence:NM_004051.5Link to Protein Sequence:NP_004042.1Re-query CCDS DB by Nucleotide ID:NM_004051Re-query CCDS DB by Protein ID:NP_004042Link to BLAST:NP_004042.1
Original member Current member NCBI NM_203314.3 NP_976059.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_203314.3Link to Protein Sequence:NP_976059.1Re-query CCDS DB by Nucleotide ID:NM_203314Re-query CCDS DB by Protein ID:NP_976059Link to BLAST:NP_976059.1
Original member Current member NCBI NM_203315.3 NP_976060.1 Accepted alive Link to Nucleotide Sequence:NM_203315.3Link to Protein Sequence:NP_976060.1Re-query CCDS DB by Nucleotide ID:NM_203315Re-query CCDS DB by Protein ID:NP_976060Link to BLAST:NP_976060.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004042.1 343 Q02338 343 100% 0 0
NP_976059.1 343 Q02338 343 100% 0 0
NP_976060.1 343 Q02338 343 100% 0 0

Chromosomal Locations for CCDS 3328.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 197511895 197512364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197514264 197514416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197522640 197522781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197532412 197532522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197533489 197533561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197546361 197546443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGCTGGCCACCCGCCTCTCCAGACCCCTGTCACGGCTCCCAGGAAAAACCCTAAGTGCCTGTGATAGAG
AAAATGGAGCAAGACGCCCACTATTGCTTGGTTCTACTTCCTTTATCCCGATTGGCCGTCGGACTTATGC
CAGTGCGGCGGAGCCGGTTGGCAGCAAAGCTGTCCTGGTCACAGGCTGTGACTCTGGATTTGGGTTCTCA
TTGGCCAAGCATCTGCATTCAAAAGGCTTCCTTGTGTTTGCTGGCTGCTTGATGAAGGACAAAGGCCATG
ATGGGGTCAAGGAGCTGGACAGCCTAAACAGTGACCGATTGAGAACCGTCCAGCTCAATGTCTGCAGCAG
CGAAGAGGTGGAGAAAGTGGTGGAGATTGTCCGCTCGAGCCTGAAGGACCCTGAGAAAGGCATGTGGGGC
CTCGTTAACAATGCCGGCATCTCAACGTTCGGGGAGGTGGAGTTCACCAGCCTGGAGACCTACAAGCAGG
TGGCAGAAGTGAACCTTTGGGGCACAGTGCGGATGACGAAATCCTTTCTCCCCCTCATCCGAAGGGCCAA
AGGCCGCGTCGTCAATATCAGCAGCATGCTGGGCCGCATGGCCAACCCGGCCCGCTCCCCGTACTGCATC
ACCAAGTTCGGGGTAGAGGCTTTCTCGGACTGCCTGCGCTATGAGATGTACCCCCTGGGCGTGAAGGTCA
GCGTGGTGGAGCCCGGCAACTTCATCGCTGCCACCAGCCTTTACAGCCCTGAGAGCATTCAGGCCATCGC
CAAGAAGATGTGGGAGGAGCTGCCTGAGGTCGTGCGCAAGGACTACGGCAAGAAGTACTTTGATGAAAAG
ATCGCCAAGATGGAGACCTACTGCAGCAGTGGCTCCACAGACACGTCCCCTGTCATCGATGCTGTCACAC
ACGCCCTGACCGCCACCACCCCCTACACCCGCTACCACCCCATGGACTACTACTGGTGGCTGCGAATGCA
GATCATGACCCACTTGCCTGGAGCCATCTCCGACATGATCTACATCCGCTGA

Translation (343 aa):
MLATRLSRPLSRLPGKTLSACDRENGARRPLLLGSTSFIPIGRRTYASAAEPVGSKAVLVTGCDSGFGFS
LAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQLNVCSSEEVEKVVEIVRSSLKDPEKGMWG
LVNNAGISTFGEVEFTSLETYKQVAEVNLWGTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCI
TKFGVEAFSDCLRYEMYPLGVKVSVVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEK
IAKMETYCSSGSTDTSPVIDAVTHALTATTPYTRYHPMDYYWWLRMQIMTHLPGAISDMIYIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH