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Report for CCDS9336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9336.1 Public Homo sapiens 13 USPL1 24 110 108 CCDS HistoryNCBI Gene:10208Re-query CCDS DB by CCDS ID:9336.1Re-query CCDS DB by GeneID:10208See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9336.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255304.9 ENSP00000255304.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000255304.9Link to Ensembl Protein Viewer:ENSP00000255304.4Re-query CCDS DB by Nucleotide ID:ENST00000255304Re-query CCDS DB by Protein ID:ENSP00000255304
Original member Current member NCBI NM_005800.5 NP_005791.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005800.5Link to Protein Sequence:NP_005791.3Re-query CCDS DB by Nucleotide ID:NM_005800Re-query CCDS DB by Protein ID:NP_005791Link to BLAST:NP_005791.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005791.3 1092 Q5W0Q7-1 1092 100% 0 0

Chromosomal Locations for CCDS 9336.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 30621141 30621239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30621764 30621892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30630835 30631474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30637744 30637857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30642628 30642757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30646932 30647057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30653148 30653305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30657474 30659356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3279 nt):
ATGATGGATTCTCCGAAGATTGGAAATGGTTTGCCAGTGATTGGACCAGGGACTGATATAGGGATATCTT
CACTCCACATGGTGGGGTATTTGGGAAAAAATTTTGATTCAGCTAAAGTTCCATCAGATGAGTATTGCCC
TGCTTGTAGAGAGAAGGGAAAGTTAAAAGCCTTAAAGACTTACCGAATTAGTTTTCAAGAATCTATCTTT
TTGTGTGAGGATCTGCAGTGCATCTATCCTTTGGGCTCTAAATCACTTAATAACCTAATTTCTCCTGATT
TGGAAGAATGTCACACTCCACATAAGCCTCAGAAAAGGAAGAGCTTAGAAAGCAGCTATAAGGATTCACT
TCTTTTAGCAAATTCCAAAAAGACTAGAAATTATATTGCTATTGACGGTGGAAAAGTTTTGAACAGCAAA
CATAATGGAGAAGTATATGACGAAACCTCGTCAAACTTACCTGATAGTAGTGGTCAACAGAATCCAATTA
GGACAGCTGATTCCTTGGAGCGGAATGAGATTTTGGAAGCTGATACTGTTGACATGGCTACTACAAAAGA
TCCTGCTACAGTTGATGTCTCTGGAACTGGCAGACCTTCCCCTCAAAATGAAGGATGTACATCTAAACTG
GAAATGCCACTGGAGAGCAAATGTACATCATTTCCCCAGGCTTTATGTGTCCAGTGGAAAAATGCTTATG
CTCTCTGTTGGTTAGACTGTATCCTGTCAGCTTTGGTGCACTCGGAAGAGTTAAAGAACACCGTGACTGG
ACTGTGCTCGAAGGAGGAATCTATATTCTGGCGGTTGCTTACAAAATATAATCAAGCAAATACACTTCTA
TATACCAGTCAATTGAGTGGTGTTAAAGATGGAGATTGTAAAAAACTTACCTCAGAAATATTTGCAGAGA
TAGAGACCTGTCTGAATGAAGTTAGAGATGAAATTTTTATTAGCCTTCAGCCCCAGCTTAGATGCACATT
AGGTGATATGGAAAGCCCTGTGTTTGCATTTCCCCTGCTCTTAAAACTAGAAACCCACATTGAAAAGCTC
TTCCTATATTCTTTTTCTTGGGACTTTGAATGTTCGCAGTGTGGACACCAATATCAAAACAGGCATATGA
AGAGTCTGGTCACCTTTACAAATGTCATCCCTGAGTGGCACCCACTTAATGCTGCCCATTTTGGTCCATG
TAACAATTGCAACAGTAAATCACAAATAAGAAAAATGGTATTAGAAAAAGTATCTCCCATATTCATGTTG
CACTTTGTAGAAGGCTTACCACAGAATGACTTGCAGCACTATGCATTTCATTTTGAAGGCTGTCTTTATC
AGATAACTTCTGTAATTCAGTATCGAGCAAATAATCATTTTATAACATGGATTTTAGATGCTGATGGAAG
TTGGCTGGAATGTGATGACTTAAAAGGCCCATGTTCTGAAAGGCACAAGAAATTTGAAGTTCCTGCTTCA
GAGATACATATTGTTATTTGGGAAAGAAAAATATCCCAAGTGACAGATAAAGAAGCTGCCTGCCTTCCAC
TTAAAAAGACTAATGACCAACACGCTCTCAGTAATGAGAAACCAGTATCTTTAACATCGTGTTCTGTGGG
TGATGCTGCCTCAGCTGAAACAGCCTCAGTAACTCACCCTAAAGATATATCAGTTGCCCCTCGTACTCTT
TCACAGGACACAGCTGTAACTCATGGAGATCATTTACTTTCAGGTCCAAAAGGTTTGGTTGACAATATTT
TACCTCTGACACTTGAAGAAACTATCCAGAAAACAGCCTCAGTTTCACAGTTAAATTCTGAAGCTTTCCT
GTTAGAAAATAAACCTGTAGCAGAAAATACAGGAATTCTCAAAACCAATACTTTGCTATCACAAGAATCA
CTAATGGCTTCTTCAGTATCAGCTCCATGTAATGAAAAGCTTATTCAAGACCAATTTGTGGACATAAGTT
TTCCATCCCAAGTTGTAAATACAAACATGCAGTCAGTACAGCTGAATACAGAAGATACTGTAAATACTAA
ATCTGTGAATAATACTGATGCTACTGGTCTTATACAGGGAGTGAAGTCAGTAGAAATTGAGAAGGACGCT
CAGTTAAAACAATTCCTTACACCAAAAACTGAACAATTAAAACCAGAACGTGTCACATCTCAGGTATCTA
ATTTGAAGAAAAAAGAAACTACAGCAGATTCTCAAACCACAACATCTAAGTCATTACAGAATCAGTCTCT
GAAAGAAAATCAGAAGAAGCCATTTGTGGGAAGTTGGGTTAAAGGCTTAATAAGCAGGGGTGCTTCTTTT
ATGCCACTCTGTGTTTCAGCTCATAATAGAAACACTATAACTGATTTACAACCTTCAGTTAAAGGGGTAA
ATAATTTTGGTGGCTTTAAAACTAAAGGTATAAACCAGAAGGCCAGCCACGTATCCAAGAAAGCTCGTAA
GAGTGCAAGTAAGCCTCCTCCCATCAGTAAGCCACCAGCAGGCCCTCCATCGTCTAATGGCACAGCTGCC
CACCCACATGCTCATGCTGCTTCAGAAGTTTTGGAAAAGTCTGGAAGCACCTCATGTGGAGCTCAACTCA
ACCACAGTTCTTATGGGAATGGTATTTCTTCAGCAAACCATGAAGACTTGGTGGAAGGTCAGATTCATAA
ACTTCGTCTAAAACTTCGTAAAAAGCTAAAGGCAGAAAAGAAGAAATTAGCTGCTCTTATGTCTTCCCCG
CAAAGCAGAACAGTTCGAAGTGAAAATCTAGAACAGGTGCCCCAGGATGGGTCTCCAAATGATTGTGAAT
CAATAGAGGACTTGTTAAATGAGCTACCATATCCAATTGATATTGCCAGTGAGTCTGCATGCACCACTGT
TCCTGGTGTTTCCCTGTACAGTAGTCAAACTCATGAAGAAATTTTAGCGGAATTATTGTCTCCTACACCT
GTTTCAACAGAGCTGTCAGAAAATGGGGAAGGTGACTTTAGGTATTTGGGAATGGGAGATAGTCATATCC
CACCACCAGTACCAAGTGAATTCAATGATGTTTCCCAGAACACACATCTGAGACAGGACCATAATTATTG
TAGCCCCACCAAGAAAAATCCATGTGAAGTTCAGCCAGACTCTCTGACAAATAATGCCTGCGTTAGAACA
TTAAACTTGGAGAGTCCGATGAAGACTGATATTTTCGATGAGTTTTTTTCCTCCTCAGCATTAAATGCTT
TAGCAAATGACACATTAGACCTACCTCATTTCGATGAATATCTGTTTGAGAATTATTGA

Translation (1092 aa):
MMDSPKIGNGLPVIGPGTDIGISSLHMVGYLGKNFDSAKVPSDEYCPACREKGKLKALKTYRISFQESIF
LCEDLQCIYPLGSKSLNNLISPDLEECHTPHKPQKRKSLESSYKDSLLLANSKKTRNYIAIDGGKVLNSK
HNGEVYDETSSNLPDSSGQQNPIRTADSLERNEILEADTVDMATTKDPATVDVSGTGRPSPQNEGCTSKL
EMPLESKCTSFPQALCVQWKNAYALCWLDCILSALVHSEELKNTVTGLCSKEESIFWRLLTKYNQANTLL
YTSQLSGVKDGDCKKLTSEIFAEIETCLNEVRDEIFISLQPQLRCTLGDMESPVFAFPLLLKLETHIEKL
FLYSFSWDFECSQCGHQYQNRHMKSLVTFTNVIPEWHPLNAAHFGPCNNCNSKSQIRKMVLEKVSPIFML
HFVEGLPQNDLQHYAFHFEGCLYQITSVIQYRANNHFITWILDADGSWLECDDLKGPCSERHKKFEVPAS
EIHIVIWERKISQVTDKEAACLPLKKTNDQHALSNEKPVSLTSCSVGDAASAETASVTHPKDISVAPRTL
SQDTAVTHGDHLLSGPKGLVDNILPLTLEETIQKTASVSQLNSEAFLLENKPVAENTGILKTNTLLSQES
LMASSVSAPCNEKLIQDQFVDISFPSQVVNTNMQSVQLNTEDTVNTKSVNNTDATGLIQGVKSVEIEKDA
QLKQFLTPKTEQLKPERVTSQVSNLKKKETTADSQTTTSKSLQNQSLKENQKKPFVGSWVKGLISRGASF
MPLCVSAHNRNTITDLQPSVKGVNNFGGFKTKGINQKASHVSKKARKSASKPPPISKPPAGPPSSNGTAA
HPHAHAASEVLEKSGSTSCGAQLNHSSYGNGISSANHEDLVEGQIHKLRLKLRKKLKAEKKKLAALMSSP
QSRTVRSENLEQVPQDGSPNDCESIEDLLNELPYPIDIASESACTTVPGVSLYSSQTHEEILAELLSPTP
VSTELSENGEGDFRYLGMGDSHIPPPVPSEFNDVSQNTHLRQDHNYCSPTKKNPCEVQPDSLTNNACVRT
LNLESPMKTDIFDEFFSSSALNALANDTLDLPHFDEYLFENY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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