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Report for CCDS10228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10228.1 Public Homo sapiens 15 FEM1B 24 110 108 CCDS HistoryNCBI Gene:10116Re-query CCDS DB by CCDS ID:10228.1Re-query CCDS DB by GeneID:10116See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10228.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306917.5 ENSP00000307298.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306917.5Link to Ensembl Protein Viewer:ENSP00000307298.4Re-query CCDS DB by Nucleotide ID:ENST00000306917Re-query CCDS DB by Protein ID:ENSP00000307298
Original member Current member NCBI NM_015322.5 NP_056137.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015322.5Link to Protein Sequence:NP_056137.1Re-query CCDS DB by Nucleotide ID:NM_015322Re-query CCDS DB by Protein ID:NP_056137Link to BLAST:NP_056137.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056137.1 627 Q9UK73 627 100% 0 0

Chromosomal Locations for CCDS 10228.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 68278418 68278665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 68289607 68291242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGGAGGGCCTGGCTGGCTATGTATACAAGGCGGCCAGCGAGGGCAAGGTGCTGACTCTGGCCGCCTTGC
TTCTCAACCGGTCTGAAAGCGACATCCGCTATCTGCTTGGCTATGTCAGCCAGCAGGGAGGGCAGCGCTC
CACGCCCCTCATCATCGCAGCCCGCAATGGACACGCAAAGGTGGTACGCTTGCTCTTAGAACATTACCGG
GTGCAGACTCAGCAGACTGGCACCGTCCGCTTCGACGGGTATGTCATTGATGGTGCCACTGCTCTTTGGT
GTGCAGCTGGAGCAGGACATTTTGAAGTTGTTAAACTTCTAGTCAGCCATGGAGCCAACGTGAACCATAC
CACAGTAACTAATTCAACCCCCCTGCGGGCAGCATGCTTTGATGGCAGACTGGACATTGTGAAATACTTG
GTTGAAAATAATGCCAACATCAGCATTGCCAACAAATATGACAACACCTGCCTAATGATTGCGGCATATA
AGGGACACACTGATGTGGTCAGATACCTTTTAGAACAACGTGCTGATCCCAATGCCAAAGCACATTGTGG
AGCCACAGCATTGCACTTTGCAGCTGAAGCTGGGCACATAGATATTGTGAAAGAGCTGATAAAATGGCGT
GCTGCTATAGTAGTGAATGGCCATGGGATGACGCCATTGAAAGTAGCTGCCGAAAGCTGTAAAGCTGATG
TCGTAGAACTGTTACTCTCTCATGCTGATTGCGACCGAAGAAGTCGGATTGAAGCTTTGGAACTCTTGGG
TGCCTCCTTTGCAAATGACCGTGAGAACTATGACATCATAAAGACATACCACTATCTATATTTAGCCATG
TTAGAGAGGTTCCAAGATGGTGATAACATTCTCGAAAAAGAGGTTCTTCCACCAATCCATGCTTATGGGA
ATAGAACTGAATGTAGAAATCCTCAGGAACTGGAGTCCATTCGGCAAGACAGAGATGCTCTTCATATGGA
AGGCCTTATAGTTCGGGAACGGATTTTAGGTGCTGACAATATTGATGTTTCTCATCCCATCATTTACAGA
GGAGCTGTTTATGCGGATAATATGGAATTTGAGCAGTGTATCAAGTTGTGGCTTCATGCCCTGCACCTCA
GACAAAAAGGTAACAGGAACACCCACAAGGATCTTCTTCGATTTGCTCAAGTTTTCTCACAAATGATACA
TTTGAATGAAACTGTGAAGGCCCCAGACATAGAATGTGTTTTGAGATGCAGTGTTTTGGAAATAGAACAA
AGTATGAACAGAGTGAAAAATATTTCAGATGCTGATGTCCACAATGCTATGGACAATTATGAATGTAATC
TCTATACCTTTCTGTATTTAGTGTGCATCTCTACCAAAACACAGTGCAGCGAAGAAGATCAGTGCAAAAT
TAACAAGCAGATCTACAACCTGATTCACCTTGATCCCAGAACTCGTGAAGGTTTCACCTTGCTGCATCTG
GCTGTCAATTCCAATACTCCAGTTGATGATTTCCACACCAATGACGTCTGCAGCTTTCCAAATGCACTTG
TCACAAAGCTCCTGCTGGACTGTGGTGCTGAGGTGAATGCCGTGGACAATGAGGGAAACAGTGCCCTTCA
TATTATCGTTCAGTACAACAGGCCCATCAGTGATTTTTTGACCTTGCACTCCATCATCATTAGCCTAGTT
GAAGCCGGAGCTCACACTGACATGACGAATAAACAGAATAAGACTCCGCTAGACAAAAGTACAACTGGGG
TATCTGAAATACTGCTTAAAACTCAAATGAAGATGAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCGGGC
TAATGACATTAACTACCAAGACCAGATCCCCAGAACTCTTGAAGAGTTTGTTGGATTTCATTAA

Translation (627 aa):
MEGLAGYVYKAASEGKVLTLAALLLNRSESDIRYLLGYVSQQGGQRSTPLIIAARNGHAKVVRLLLEHYR
VQTQQTGTVRFDGYVIDGATALWCAAGAGHFEVVKLLVSHGANVNHTTVTNSTPLRAACFDGRLDIVKYL
VENNANISIANKYDNTCLMIAAYKGHTDVVRYLLEQRADPNAKAHCGATALHFAAEAGHIDIVKELIKWR
AAIVVNGHGMTPLKVAAESCKADVVELLLSHADCDRRSRIEALELLGASFANDRENYDIIKTYHYLYLAM
LERFQDGDNILEKEVLPPIHAYGNRTECRNPQELESIRQDRDALHMEGLIVRERILGADNIDVSHPIIYR
GAVYADNMEFEQCIKLWLHALHLRQKGNRNTHKDLLRFAQVFSQMIHLNETVKAPDIECVLRCSVLEIEQ
SMNRVKNISDADVHNAMDNYECNLYTFLYLVCISTKTQCSEEDQCKINKQIYNLIHLDPRTREGFTLLHL
AVNSNTPVDDFHTNDVCSFPNALVTKLLLDCGAEVNAVDNEGNSALHIIVQYNRPISDFLTLHSIIISLV
EAGAHTDMTNKQNKTPLDKSTTGVSEILLKTQMKMSLKCLAARAVRANDINYQDQIPRTLEEFVGFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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