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Report for CCDS4953.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4953.2 Public Homo sapiens 6 LRRC1 24 110 108 CCDS HistoryNCBI Gene:55227Re-query CCDS DB by CCDS ID:4953.2Re-query CCDS DB by GeneID:55227See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4953.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370888.6 ENSP00000359925.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370888.6Link to Ensembl Protein Viewer:ENSP00000359925.1Re-query CCDS DB by Nucleotide ID:ENST00000370888Re-query CCDS DB by Protein ID:ENSP00000359925
Original member Current member NCBI NM_018214.5 NP_060684.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018214.5Link to Protein Sequence:NP_060684.4Re-query CCDS DB by Nucleotide ID:NM_018214Re-query CCDS DB by Protein ID:NP_060684Link to BLAST:NP_060684.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060684.4 524 Q9BTT6-1 524 100% 0 0

Chromosomal Locations for CCDS 4953.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 53795257 53795415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53842110 53842227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53878993 53879071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53882887 53882976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53896498 53896554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53896829 53896892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53897285 53897359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53899747 53899891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53902629 53902747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53904379 53904462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53913854 53913969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53919498 53919670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53920625 53920761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53922635 53922793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGTTCCACTGCATCCCCCTGTGGCGGTGCAACCGTCATGTGGAGAGCATCGACAAGCGCCACTGCTCGC
TGGTCTACGTCCCCGAGGAGATCTACCGCTATGCCCGGAGCCTGGAGGAGCTGCTGCTGGACGCCAACCA
GCTCCGCGAGCTGCCCGAGCAATTTTTCCAGCTAGTCAAATTACGAAAGCTTGGACTTAGTGATAATGAA
ATTCAGCGGCTCCCTCCAGAAATAGCAAACTTCATGCAGCTGGTGGAACTAGATGTGTCTCGAAATGAGA
TTCCTGAAATTCCAGAAAGCATTTCATTCTGTAAAGCACTGCAGGTAGCTGACTTCAGCGGAAACCCACT
GACTAGGTTGCCAGAAAGCTTTCCTGAATTACAGAATTTAACATGTCTTTCTGTAAATGACATCTCACTA
CAGTCTCTACCTGAAAATATTGGCAATCTTTATAACCTGGCTTCACTGGAACTGAGAGAGAATCTTCTTA
CATATCTTCCTGACTCTCTTACCCAGCTGCGAAGACTAGAAGAACTTGATTTAGGAAACAATGAAATATA
TAATTTGCCAGAATCAATTGGAGCCCTCTTACATCTAAAAGATCTCTGGTTGGATGGAAATCAACTGTCA
GAATTACCTCAGGAAATAGGAAATCTGAAGAACCTGCTGTGTTTAGATGTCTCTGAAAACAGGTTGGAAA
GACTTCCTGAAGAAATCAGTGGCCTGACTTCATTAACGGATTTAGTCATTTCCCAGAACTTATTAGAAAC
GATTCCGGATGGCATTGGAAAACTAAAGAAACTGTCAATCTTGAAGGTGGATCAGAATAGACTCACACAG
TTGCCTGAAGCAGTTGGGGAATGTGAAAGTCTCACTGAGTTAGTTCTTACAGAAAATCAGCTCCTGACCC
TGCCTAAAAGCATTGGAAAACTAAAGAAGTTGAGCAACTTGAATGCAGACAGAAATAAATTAGTGTCCTT
ACCAAAAGAGATCGGCGGGTGCTGCAGCCTCACTGTGTTCTGTGTACGTGACAACAGACTAACTCGGATA
CCTGCAGAGGTGTCACAGGCAACAGAACTTCATGTCCTGGATGTGGCAGGGAACAGGTTGCTGCATCTAC
CTTTATCCCTGACTGCCTTGAAGTTGAAGGCTCTGTGGCTATCTGACAACCAGTCCCAGCCCCTGCTTAC
ATTCCAGACAGACACAGACTACACCACAGGAGAGAAGATTTTAACCTGTGTCTTACTTCCTCAGCTGCCT
TCTGAACCTACTTGTCAAGAGAATCTGCCTCGCTGTGGTGCACTGGAGAACTTGGTAAATGATGTCTCTG
ATGAAGCCTGGAACGAGCGTGCTGTCAACAGAGTCAGTGCGATCCGATTTGTGGAGGATGAGAAAGATGA
AGAAGACAATGAGACGAGAACACTTCTAAGGCGAGCCACTCCACACCCAGGGGAGTTAAAGCACATGAAA
AAGACAGTGGAGAATTTACGGAATGACATGAATGCTGCTAAAGGACTGGACTCAAACAAAAACGAGGTCA
ATCATGCCATTGACCGAGTGACCACTTCTGTGTAG

Translation (524 aa):
MFHCIPLWRCNRHVESIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSDNE
IQRLPPEIANFMQLVELDVSRNEIPEIPESISFCKALQVADFSGNPLTRLPESFPELQNLTCLSVNDISL
QSLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGNQLS
ELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLLETIPDGIGKLKKLSILKVDQNRLTQ
LPEAVGECESLTELVLTENQLLTLPKSIGKLKKLSNLNADRNKLVSLPKEIGGCCSLTVFCVRDNRLTRI
PAEVSQATELHVLDVAGNRLLHLPLSLTALKLKALWLSDNQSQPLLTFQTDTDYTTGEKILTCVLLPQLP
SEPTCQENLPRCGALENLVNDVSDEAWNERAVNRVSAIRFVEDEKDEEDNETRTLLRRATPHPGELKHMK
KTVENLRNDMNAAKGLDSNKNEVNHAIDRVTTSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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