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Report for CCDS4268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4268.1 Public Homo sapiens 5 DELE1 24 110 108 CCDS HistoryNCBI Gene:9812Re-query CCDS DB by CCDS ID:4268.1Re-query CCDS DB by GeneID:9812See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4268.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000194118.8 ENSP00000194118.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000194118.8Link to Ensembl Protein Viewer:ENSP00000194118.4Re-query CCDS DB by Nucleotide ID:ENST00000194118Re-query CCDS DB by Protein ID:ENSP00000194118
Original member Current member EBI ENST00000432126.7 ENSP00000396225.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000432126.7Link to Ensembl Protein Viewer:ENSP00000396225.2Re-query CCDS DB by Nucleotide ID:ENST00000432126Re-query CCDS DB by Protein ID:ENSP00000396225
Original member Current member NCBI NM_001142603.3 NP_001136075.1 Accepted alive Link to Nucleotide Sequence:NM_001142603.3Link to Protein Sequence:NP_001136075.1Re-query CCDS DB by Nucleotide ID:NM_001142603Re-query CCDS DB by Protein ID:NP_001136075Link to BLAST:NP_001136075.1
Original member Current member NCBI NM_014773.5 NP_055588.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014773.5Link to Protein Sequence:NP_055588.3Re-query CCDS DB by Nucleotide ID:NM_014773Re-query CCDS DB by Protein ID:NP_055588Link to BLAST:NP_055588.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136075.1 515 Q14154 515 100% 0 0
NP_055588.3 515 Q14154 515 100% 0 0

Chromosomal Locations for CCDS 4268.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141923942 141923972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141924581 141924695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141925410 141925527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141928151 141928298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141929582 141929740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141929989 141930074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141930178 141930274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141933259 141933401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141934240 141934398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141934494 141934586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141937198 141937357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141938521 141938759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGTGGCGCCTCCCGGGACTCCTGGGCCGAGCTCTTCCCCGTACACTGGGACCTAGCCTCTGGAGGGTGA
CTCCTAAGTCCACCAGCCCAGATGGGCCTCAGACTACCTCCTCCACTTTGCTGGTTCCTGTGCCTAACCT
CGACAGGTCAGGTCCCCATGGCCCAGGCACGAGCGGGGGTCCAAGGTCCCATGGATGGAAGGATGCCTTC
CAATGGATGTCTTCCCGTGTCTCCCCGAACACCCTATGGGATGCCATATCTTGGGGCACTCTGGCCGTGC
TGGCCCTGCAGCTGGCAAGGCAGATCCACTTCCAGGCATCCCTGCCAGCAGGACCTCAGCGGGTAGAACA
CTGCTCCTGGCACAGTCCCCTGGACCGTTTCTTCTCATCTCCCTTGTGGCACCCATGCTCCTCACTGCGA
CAACACATCCTCCCCAGCCCCGATGGCCCAGCTCCCAGGCACACTGGCCTCAGGGAACCCAGGCTTGGCC
AGGAAGAAGCCTCAGCTCAGCCCCGGAACTTCTCACACAACTCTTTGAGAGGAGCTCGTCCTCAGGACCC
CTCTGAGGAAGGTCCCGGTGATTTTGGCTTCCTGCATGCCAGTAGTAGCATCGAGTCCGAGGCAAAACCA
GCCCAGCCTCAGCCCACTGGTGAAAAGGAACAAGATAAATCAAAAACTCTTTCCCTTGAGGAGGCTGTGA
CTTCCATTCAGCAGCTCTTCCAGCTCAGTGTTTCCATCGCTTTCAACTTCCTGGGAACAGAGAACATGAA
GAGTGGCGACCACACGGCAGCCTTTTCTTACTTCCAGAAAGCTGCAGCCCGCGGCTACAGCAAAGCGCAG
TACAATGCGGGCTTGTGTCATGAGCATGGCAGAGGCACCCCCAGGGACATTAGCAAGGCGGTCCTTTATT
ATCAGTTGGCTGCCAGCCAGGGCCACAGCCTGGCTCAGTACCGCTATGCCAGGTGCCTACTACGAGACCC
AGCCTCTTCGTGGAACCCTGAGCGGCAGAGGGCAGTGTCCTTGCTGAAGCAGGCTGCAGACTCAGGCTTG
AGAGAGGCCCAAGCTTTCCTCGGGGTGCTTTTCACCAAGGAGCCCTACCTGGATGAGCAGAGAGCTGTGA
AATATCTTTGGCTTGCAGCCAACAATGGGGACTCACAGAGCAGGTACCACCTTGGAATTTGCTATGAGAA
AGGCCTTGGTGTGCAGAGGAATCTGGGAGAGGCCTTGAGATGTTACCAGCAGTCAGCCGCTCTGGGAAAT
GAGGCCGCCCAGGAGAGGCTGCGAGCCCTCTTTTCCATGGGGGCTGCAGCCCCGGGGCCCAGCGACCTGA
CAGTTACAGGACTGAAGTCTTTCTCCAGCCCCTCCCTCTGCAGCTTGAACACCCTGCTAGCAGGAACCTC
ACGCCTACCACATGCCTCGAGCACAGGCAACCTTGGCCTCCTCTGCAGAAGTGGGCATCTCGGAGCCAGC
CTGGAAGCCTCCAGCAGGGCTATTCCCCCACACCCCTACCCACTGGAAAGGAGTGTTGTAAGACTAGGTT
TTGGCTAA

Translation (515 aa):
MWRLPGLLGRALPRTLGPSLWRVTPKSTSPDGPQTTSSTLLVPVPNLDRSGPHGPGTSGGPRSHGWKDAF
QWMSSRVSPNTLWDAISWGTLAVLALQLARQIHFQASLPAGPQRVEHCSWHSPLDRFFSSPLWHPCSSLR
QHILPSPDGPAPRHTGLREPRLGQEEASAQPRNFSHNSLRGARPQDPSEEGPGDFGFLHASSSIESEAKP
AQPQPTGEKEQDKSKTLSLEEAVTSIQQLFQLSVSIAFNFLGTENMKSGDHTAAFSYFQKAAARGYSKAQ
YNAGLCHEHGRGTPRDISKAVLYYQLAASQGHSLAQYRYARCLLRDPASSWNPERQRAVSLLKQAADSGL
REAQAFLGVLFTKEPYLDEQRAVKYLWLAANNGDSQSRYHLGICYEKGLGVQRNLGEALRCYQQSAALGN
EAAQERLRALFSMGAAAPGPSDLTVTGLKSFSSPSLCSLNTLLAGTSRLPHASSTGNLGLLCRSGHLGAS
LEASSRAIPPHPYPLERSVVRLGFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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