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Report for CCDS34296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34296.1 Public Homo sapiens 5 FAF2 24 110 108 CCDS HistoryNCBI Gene:23197Re-query CCDS DB by CCDS ID:34296.1Re-query CCDS DB by GeneID:23197See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34296.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261942.7 ENSP00000261942.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261942.7Link to Ensembl Protein Viewer:ENSP00000261942.6Re-query CCDS DB by Nucleotide ID:ENST00000261942Re-query CCDS DB by Protein ID:ENSP00000261942
Original member Current member NCBI NM_014613.3 NP_055428.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014613.3Link to Protein Sequence:NP_055428.1Re-query CCDS DB by Nucleotide ID:NM_014613Re-query CCDS DB by Protein ID:NP_055428Link to BLAST:NP_055428.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055428.1 445 Q96CS3 445 100% 0 0

Chromosomal Locations for CCDS 34296.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176448408 176448470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176479188 176479256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176486355 176486489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176488951 176489027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176492194 176492332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176493999 176494084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176494184 176494275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176496486 176496663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176498914 176499085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176500003 176500146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176506768 176506950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGCGGCGCCTGAGGAGCGGGATCTAACCCAGGAGCAGACAGAGAAGCTGCTGCAGTTTCAGGATCTCA
CTGGCATCGAATCTATGGATCAGTGTCGCCATACCTTGGAACAGCATAACTGGAACATAGAGGCTGCTGT
ACAGGACAGATTGAATGAGCAAGAGGGCGTACCTAGTGTTTTCAACCCACCTCCATCACGACCCCTGCAG
GTTAATACAGCTGACCACAGGATCTACAGCTATGTTGTCTCAAGACCTCAACCAAGGGGGCTGCTTGGAT
GGGGTTATTACTTGATAATGCTTCCATTCCGGTTTACCTATTACACGATACTTGATATATTTAGGTTTGC
TCTTCGTTTTATACGGCCTGACCCTCGCAGCCGGGTCACTGACCCCGTTGGGGACATTGTTTCATTTATG
CACTCTTTTGAAGAGAAATATGGGAGGGCACACCCTGTCTTCTACCAGGGAACGTACAGCCAGGCACTTA
ACGATGCCAAAAGGGAGCTTCGCTTTCTTTTGGTTTATCTTCATGGAGATGATCACCAGGACTCTGATGA
GTTTTGTCGCAACACACTCTGTGCACCTGAAGTTATTTCACTAATAAACACTAGGATGCTCTTCTGGGCA
TGCTCTACAAACAAACCTGAGGGATACAGGGTCTCACAGGCTTTACGAGAGAACACCTATCCATTCCTGG
CCATGATTATGCTGAAGGATCGAAGGATGACTGTGGTGGGACGGCTAGAAGGCCTCATTCAACCTGATGA
CCTCATTAACCAACTGACATTTATCATGGATGCTAACCAGACTTACCTGGTGTCAGAACGCCTAGAAAGG
GAAGAAAGAAACCAGACCCAAGTGCTGAGACAACAGCAGGATGAGGCCTACCTGGCCTCTCTCAGAGCTG
ACCAGGAGAAAGAAAGAAAGAAACGGGAGGAGCGGGAGCGTAAGCGGCGGAAGGAGGAGGAGGTGCAACA
GCAAAAGTTGGCAGAGGAGAGACGGCGGCAGAATTTACAGGAGGAAAAGGAAAGGAAGTTGGAATGCCTG
CCCCCTGAACCTTCCCCTGATGACCCTGAAAGTGTCAAGATCATCTTCAAATTACCTAATGATTCTCGAG
TAGAGAGACGATTCCACTTTTCACAGTCTCTAACAGTAATCCACGACTTCTTATTCTCCTTGAAGGAAAG
CCCAGAAAAGTTTCAGATTGAAGCCAATTTTCCCAGGCGAGTGCTGCCCTGCATCCCTTCAGAGGAGTGG
CCCAATCCCCCTACGCTACAGGAGGCCGGACTCAGCCACACAGAAGTTCTTTTTGTTCAGGACCTAACTG
ACGAATGA

Translation (445 aa):
MAAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSVFNPPPSRPLQ
VNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRFIRPDPRSRVTDPVGDIVSFM
HSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGDDHQDSDEFCRNTLCAPEVISLINTRMLFWA
CSTNKPEGYRVSQALRENTYPFLAMIMLKDRRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLER
EERNQTQVLRQQQDEAYLASLRADQEKERKKREERERKRRKEEEVQQQKLAEERRRQNLQEEKERKLECL
PPEPSPDDPESVKIIFKLPNDSRVERRFHFSQSLTVIHDFLFSLKESPEKFQIEANFPRRVLPCIPSEEW
PNPPTLQEAGLSHTEVLFVQDLTDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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