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Report for CCDS6774.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6774.1 Public Homo sapiens 9 ABITRAM 24 110 108 CCDS HistoryNCBI Gene:54942Re-query CCDS DB by CCDS ID:6774.1Re-query CCDS DB by GeneID:54942See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6774.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322940.11 ENSP00000363753.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322940.11Link to Ensembl Protein Viewer:ENSP00000363753.3Re-query CCDS DB by Nucleotide ID:ENST00000322940Re-query CCDS DB by Protein ID:ENSP00000363753
Original member Current member NCBI NM_017832.4 NP_060302.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017832.4Link to Protein Sequence:NP_060302.1Re-query CCDS DB by Nucleotide ID:NM_017832Re-query CCDS DB by Protein ID:NP_060302Link to BLAST:NP_060302.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060302.1 181 Q9NX38 181 100% 0 0

Chromosomal Locations for CCDS 6774.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 108934487 108934565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108935638 108935689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108936308 108936437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108939196 108939272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108939385 108939454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108939549 108939686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGGCTACCGAGCCCGAAGCCGCGGAGCCGGTGGTGCCTTCGCTCGTGGATCGATACTTCACTCGCTGGT
ACAAACCGGATGTCAAAGGAAAATTTTGTGAGGACCACTGTATACTACAGCACTCTAACCGAATATGTGT
CATCACATTGGCAGAATCTCATCCAGTTCTTCAAAGTGGAAAAACAATTAAAAGCATTTCCTATCAGATC
AGTACCAACTGTAGCAGACTTCAGAACAAGGTCTCTGGGAAATTTAAGCGGGGGGCACAGTTTCTAACAG
AGCTTGCACCTCTCTGTAAGATTTACTGCTCAGATGGTGAAGAATATACTGTGTCTAGTTGTGTTAGAGG
ACGTTTGATGGAAGTGAATGAAAACATCCTCCATAAGCCATCTATTCTTCAAGAAAAGCCATCTACTGAA
GGCTACATTGCAGTTGTGTTACCCAAATTTGAAGAAAGTAAAAGCATAACAGAAGGGTTACTGACACAAA
AACAATATGAAGAAGTCATGGTGAAACGCATTAATGCCACAACAGCTACGTCATGA

Translation (181 aa):
MATEPEAAEPVVPSLVDRYFTRWYKPDVKGKFCEDHCILQHSNRICVITLAESHPVLQSGKTIKSISYQI
STNCSRLQNKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTVSSCVRGRLMEVNENILHKPSILQEKPSTE
GYIAVVLPKFEESKSITEGLLTQKQYEEVMVKRINATTATS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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