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Report for CCDS34130.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34130.1 Public Homo sapiens 5 SLC6A19 24 110 108 CCDS HistoryNCBI Gene:340024Re-query CCDS DB by CCDS ID:34130.1Re-query CCDS DB by GeneID:340024See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34130.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304460.11 ENSP00000305302.10 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304460.11Link to Ensembl Protein Viewer:ENSP00000305302.10Re-query CCDS DB by Nucleotide ID:ENST00000304460Re-query CCDS DB by Protein ID:ENSP00000305302
Original member Current member NCBI NM_001003841.3 NP_001003841.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001003841.3Link to Protein Sequence:NP_001003841.1Re-query CCDS DB by Nucleotide ID:NM_001003841Re-query CCDS DB by Protein ID:NP_001003841Link to BLAST:NP_001003841.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003841.1 634 Q695T7 634 100% 0 0

Chromosomal Locations for CCDS 34130.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 1201651 1201852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1208746 1208886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1210444 1210581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1212303 1212484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1213463 1213573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1213953 1214065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1216558 1216686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1216789 1216945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1218903 1219107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1219505 1219664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1221151 1221313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 1221701 1221904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGGTGAGGCTCGTGCTGCCCAACCCCGGCCTAGACGCCCGGATCCCGTCCCTGGCTGAGCTGGAGACCA
TCGAGCAGGAGGAGGCCAGCTCCCGGCCGAAGTGGGACAACAAGGCGCAGTACATGCTCACCTGCCTGGG
CTTCTGCGTGGGCCTCGGCAACGTGTGGCGCTTCCCCTACCTGTGTCAGAGCCACGGAGGAGGAGCCTTC
ATGATCCCGTTCCTCATCCTGCTGGTCCTGGAGGGCATCCCCCTGCTGTACCTGGAGTTCGCCATCGGGC
AGCGGCTGCGGCGGGGCAGCCTGGGTGTGTGGAGCTCCATCCACCCGGCCCTGAAGGGCCTAGGCCTGGC
CTCCATGCTCACGTCCTTCATGGTGGGACTGTATTACAACACCATCATCTCCTGGATCATGTGGTACTTA
TTCAACTCCTTCCAGGAGCCTCTGCCCTGGAGCGACTGCCCGCTCAACGAGAACCAGACAGGGTATGTGG
ACGAGTGCGCCAGGAGCTCCCCTGTGGACTACTTCTGGTACCGAGAGACGCTCAACATCTCCACGTCCAT
CAGCGACTCGGGCTCCATCCAGTGGTGGATGCTGCTGTGCCTGGCCTGCGCATGGAGCGTCCTGTACATG
TGCACCATCCGCGGCATCGAGACCACCGGGAAGGCCGTGTACATCACCTCCACGCTGCCCTATGTCGTCC
TGACCATCTTCCTCATCCGAGGCCTGACGCTGAAGGGCGCCACCAATGGCATCGTCTTCCTCTTCACGCC
CAACGTCACGGAGCTGGCCCAGCCGGACACCTGGCTGGACGCGGGCGCACAGGTCTTCTTCTCCTTCTCC
CTGGCCTTCGGGGGCCTCATCTCCTTCTCCAGCTACAACTCTGTGCACAACAACTGCGAGAAGGACTCGG
TGATTGTGTCCATCATCAACGGCTTCACATCGGTGTATGTGGCCATCGTGGTCTACTCCGTCATTGGGTT
CCGCGCCACACAGCGCTACGACGACTGCTTCAGCACGAACATCCTGACCCTCATCAACGGGTTCGACCTG
CCTGAAGGCAACGTGACCCAGGAGAACTTTGTGGACATGCAGCAGCGGTGCAACGCCTCCGACCCCGCGG
CCTACGCGCAGCTGGTGTTCCAGACCTGCGACATCAACGCCTTCCTCTCAGAGGCCGTGGAGGGCACAGG
CCTGGCCTTCATCGTCTTCACCGAGGCCATCACCAAGATGCCGTTGTCCCCACTGTGGTCTGTGCTCTTC
TTCATTATGCTCTTCTGCCTGGGGCTGTCATCTATGTTTGGGAACATGGAGGGCGTCGTTGTGCCCCTGC
AGGACCTCAGAGTCATCCCCCCGAAGTGGCCCAAGGAGGTGCTCACAGGCCTCATCTGCCTGGGGACATT
CCTCATTGGCTTCATCTTCACGCTGAACTCCGGCCAGTACTGGCTCTCCCTGCTGGACAGCTATGCCGGC
TCCATTCCCCTGCTCATCATCGCCTTCTGCGAGATGTTCTCTGTGGTCTACGTGTACGGTGTGGACAGGT
TCAATAAGGACATCGAGTTCATGATCGGCCACAAGCCCAACATCTTCTGGCAAGTCACGTGGCGCGTGGT
CAGCCCCCTGCTCATGCTGATCATCTTCCTCTTCTTCTTCGTGGTAGAGGTCAGTCAGGAGCTGACCTAC
AGCATCTGGGACCCTGGCTACGAGGAATTTCCCAAATCCCAGAAGATCTCCTACCCGAACTGGGTGTATG
TGGTGGTGGTGATTGTGGCTGGAGTGCCCTCCCTCACCATCCCTGGCTATGCCATCTACAAGCTCATCAG
GAACCACTGCCAGAAGCCAGGGGACCATCAGGGGCTGGTGAGCACACTGTCCACAGCCTCCATGAACGGG
GACCTGAAGTACTGA

Translation (634 aa):
MVRLVLPNPGLDARIPSLAELETIEQEEASSRPKWDNKAQYMLTCLGFCVGLGNVWRFPYLCQSHGGGAF
MIPFLILLVLEGIPLLYLEFAIGQRLRRGSLGVWSSIHPALKGLGLASMLTSFMVGLYYNTIISWIMWYL
FNSFQEPLPWSDCPLNENQTGYVDECARSSPVDYFWYRETLNISTSISDSGSIQWWMLLCLACAWSVLYM
CTIRGIETTGKAVYITSTLPYVVLTIFLIRGLTLKGATNGIVFLFTPNVTELAQPDTWLDAGAQVFFSFS
LAFGGLISFSSYNSVHNNCEKDSVIVSIINGFTSVYVAIVVYSVIGFRATQRYDDCFSTNILTLINGFDL
PEGNVTQENFVDMQQRCNASDPAAYAQLVFQTCDINAFLSEAVEGTGLAFIVFTEAITKMPLSPLWSVLF
FIMLFCLGLSSMFGNMEGVVVPLQDLRVIPPKWPKEVLTGLICLGTFLIGFIFTLNSGQYWLSLLDSYAG
SIPLLIIAFCEMFSVVYVYGVDRFNKDIEFMIGHKPNIFWQVTWRVVSPLLMLIIFLFFFVVEVSQELTY
SIWDPGYEEFPKSQKISYPNWVYVVVVIVAGVPSLTIPGYAIYKLIRNHCQKPGDHQGLVSTLSTASMNG
DLKY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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