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Report for CCDS4748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4748.1 Public Homo sapiens 6 PBX2 24 110 108 CCDS HistoryNCBI Gene:5089Re-query CCDS DB by CCDS ID:4748.1Re-query CCDS DB by GeneID:5089See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4748.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375050.6 ENSP00000364190.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375050.6Link to Ensembl Protein Viewer:ENSP00000364190.3Re-query CCDS DB by Nucleotide ID:ENST00000375050Re-query CCDS DB by Protein ID:ENSP00000364190
Original member Current member NCBI NM_002586.5 NP_002577.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002586.5Link to Protein Sequence:NP_002577.2Re-query CCDS DB by Nucleotide ID:NM_002586Re-query CCDS DB by Protein ID:NP_002577Link to BLAST:NP_002577.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002577.2 430 P40425 430 100% 0 0

Chromosomal Locations for CCDS 4748.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 32186382 32186474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32186604 32186690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32186813 32186901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32187242 32187395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32187647 32187782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32187966 32188156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32188257 32188504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32188723 32188796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32189695 32189915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGGACGAACGGCTACTGGGGCCGCCCCCTCCAGGCGGGGGCCGGGGGGGCCTGGGATTGGTGAGTGGGG
AGCCTGGGGGCCCTGGCGAGCCTCCCGGTGGCGGAGACCCCGGTGGGGGTAGCGGGGGGGTCCCGGGAGG
CCGAGGGAAGCAAGACATCGGGGACATTCTGCAGCAGATAATGACCATCACCGACCAGAGCCTGGACGAG
GCCCAGGCCAAGAAACACGCCCTAAACTGCCACCGAATGAAGCCTGCTCTCTTTAGCGTCCTGTGTGAAA
TCAAGGAGAAAACTGGCCTCAGCATTCGGAGCTCCCAGGAGGAGGAGCCGGTGGACCCACAGCTGATGCG
CTTGGACAACATGCTTCTGGCAGAGGGTGTGGCTGGGCCCGAGAAAGGGGGCGGCTCAGCAGCAGCAGCT
GCAGCCGCTGCAGCCTCTGGTGGTGGTGTGTCCCCTGACAACTCCATCGAACACTCGGACTATCGCAGCA
AACTTGCCCAGATCCGTCACATATACCACTCGGAGCTGGAGAAGTATGAGCAGGCATGTAATGAGTTCAC
GACCCATGTCATGAACCTGCTGAGGGAGCAGAGCCGCACCAGGCCCGTGGCCCCCAAAGAGATGGAACGC
ATGGTGAGCATCATCCATCGAAAGTTCAGCGCCATCCAGATGCAGCTGAAGCAGAGCACCTGCGAGGCTG
TGATGATCCTGCGCTCCCGTTTCCTGGATGCCAGACGAAAGCGCCGTAACTTCAGCAAACAGGCCACTGA
GGTCCTAAATGAGTATTTCTACTCCCACCTGAGTAACCCATATCCTAGTGAGGAGGCCAAGGAGGAGCTT
GCCAAGAAGTGTGGCATCACCGTGTCTCAGGTCTCCAACTGGTTTGGCAACAAGAGGATTCGCTATAAGA
AAAACATCGGAAAGTTCCAAGAGGAGGCAAACATCTATGCTGTCAAGACCGCCGTGTCAGTCACCCAGGG
GGGCCACAGCCGCACCAGCTCCCCGACACCCCCTTCCTCTGCAGGCTCTGGCGGCTCTTTCAATCTCTCA
GGATCTGGAGACATGTTTCTGGGGATGCCTGGGCTCAACGGAGATTCCTATTCTGCTTCCCAGGTGGAAT
CACTCCGACACTCGATGGGGCCAGGGGGCTATGGGGATAACCTCGGGGGAGGCCAGATGTACAGCCCACG
GGAAATGAGGGCAAATGGCAGCTGGCAAGAGGCTGTGACCCCCTCTTCAGTGACATCCCCAACGGAGGGA
CCAGGGAGTGTTCACTCTGATACCTCCAACTGA

Translation (430 aa):
MDERLLGPPPPGGGRGGLGLVSGEPGGPGEPPGGGDPGGGSGGVPGGRGKQDIGDILQQIMTITDQSLDE
AQAKKHALNCHRMKPALFSVLCEIKEKTGLSIRSSQEEEPVDPQLMRLDNMLLAEGVAGPEKGGGSAAAA
AAAAASGGGVSPDNSIEHSDYRSKLAQIRHIYHSELEKYEQACNEFTTHVMNLLREQSRTRPVAPKEMER
MVSIIHRKFSAIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEEL
AKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAVKTAVSVTQGGHSRTSSPTPPSSAGSGGSFNLS
GSGDMFLGMPGLNGDSYSASQVESLRHSMGPGGYGDNLGGGQMYSPREMRANGSWQEAVTPSSVTSPTEG
PGSVHSDTSN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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