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Report for CCDS32791.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32791.1 Public Homo sapiens 18 SEH1L 24 110 108 CCDS HistoryNCBI Gene:81929Re-query CCDS DB by CCDS ID:32791.1Re-query CCDS DB by GeneID:81929See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32791.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399892.7 ENSP00000382779.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000399892.7Link to Ensembl Protein Viewer:ENSP00000382779.1Re-query CCDS DB by Nucleotide ID:ENST00000399892Re-query CCDS DB by Protein ID:ENSP00000382779
Original member Current member NCBI NM_001013437.2 NP_001013455.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001013437.2Link to Protein Sequence:NP_001013455.1Re-query CCDS DB by Nucleotide ID:NM_001013437Re-query CCDS DB by Protein ID:NP_001013455Link to BLAST:NP_001013455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013455.1 421 Q96EE3-1 421 100% 0 0

Chromosomal Locations for CCDS 32791.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12948122 12948232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12951855 12951905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12955463 12955609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12963160 12963371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12971153 12971251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12978752 12978892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12982518 12982675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12984040 12984190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12986862 12987057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGTTTGTGGCTCGCAGCATCGCGGCGGACCACAAGGATCTCATCCACGATGTCTCTTTCGACTTCCACG
GGCGGCGGATGGCAACCTGCTCCAGCGATCAGAGCGTTAAGGTCTGGGATAAAAGTGAAAGTGGTGATTG
GCATTGTACTGCTAGCTGGAAGACACATAGTGGATCTGTATGGCGTGTGACATGGGCCCATCCTGAATTT
GGGCAGGTTTTGGCTTCCTGTTCTTTTGACCGAACAGCTGCTGTATGGGAAGAAATAGTAGGAGAATCAA
ATGATAAACTGCGAGGACAGAGCCACTGGGTTAAAAGGACAACTCTGGTGGATAGCAGAACATCTGTTAC
TGATGTGAAGTTTGCTCCCAAGCACATGGGTCTTATGTTAGCAACCTGTTCCGCAGATGGTATAGTAAGA
ATCTATGAGGCACCAGATGTTATGAATCTCAGCCAGTGGTCTTTGCAGCATGAGATCTCATGTAAGCTAA
GCTGTAGTTGTATTTCTTGGAACCCTTCAAGCTCTCGTGCTCATTCCCCCATGATCGCCGTAGGAAGTGA
TGACAGTAGCCCCAACGCAATGGCCAAGGTTCAGATTTTTGAATATAATGAAAACACCAGGAAATATGCA
AAAGCTGAAACTCTTATGACAGTCACTGATCCTGTTCATGATATTGCATTCGCTCCAAATTTGGGAAGAT
CTTTCCATATTCTAGCAATAGCGACCAAAGATGTGAGAATTTTTACATTAAAGCCTGTGAGGAAAGAACT
GACTTCCTCTGGTGGGCCAACAAAGTTTGAAATCCATATAGTGGCTCAGTTCGATAATCATAATTCTCAG
GTCTGGCGAGTGAGTTGGAATATAACAGGAACGGTGCTAGCATCTTCAGGAGATGATGGGTGTGTAAGAT
TGTGGAAAGCTAATTATATGGACAATTGGAAGTGTACTGGTATTTTGAAAGGTAATGGGAGCCCAGTCAA
TGGGAGTTCTCAGCAGGGAACCTCAAATCCTTCCCTAGGTTCAACTATTCCAAGTCTTCAGAATTCATTA
AATGGATCTTCTGCTGGCAGGTATTTCTTTACCCCTCTGGATTCCCCACGGGCTGGATCGAGATGGTCCA
GTTATGCCCAGCTCCTTCCTCCTCCTCCTCCTCCTCTGGTAGAGCACTCTTGCGATGCTGACACTGCCAA
CCTCCAGTATCCTCACCCTCGCAGACGATATCTCTCTCGGCCTCTTAATCCCTTACCTGAGAATGAAGGG
ATTTAA

Translation (421 aa):
MFVARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEF
GQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVR
IYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYA
KAETLMTVTDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQ
VWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSTIPSLQNSL
NGSSAGRYFFTPLDSPRAGSRWSSYAQLLPPPPPPLVEHSCDADTANLQYPHPRRRYLSRPLNPLPENEG
I


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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