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Report for CCDS33208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33208.1 Public Homo sapiens 2 VPS54 24 110 108 CCDS HistoryNCBI Gene:51542Re-query CCDS DB by CCDS ID:33208.1Re-query CCDS DB by GeneID:51542See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33208.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272322.9 ENSP00000272322.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272322.9Link to Ensembl Protein Viewer:ENSP00000272322.4Re-query CCDS DB by Nucleotide ID:ENST00000272322Re-query CCDS DB by Protein ID:ENSP00000272322
Original member Current member NCBI NM_016516.3 NP_057600.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016516.3Link to Protein Sequence:NP_057600.2Re-query CCDS DB by Nucleotide ID:NM_016516Re-query CCDS DB by Protein ID:NP_057600Link to BLAST:NP_057600.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057600.2 977 Q9P1Q0-1 977 100% 0 0

Chromosomal Locations for CCDS 33208.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 63893430 63893535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63897496 63897590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63899474 63899581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63912345 63912425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63912540 63912661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63913223 63913310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63914182 63914287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63916900 63916963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63919883 63919995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63920446 63920627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63921206 63921335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63933673 63934013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63942465 63942561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63944600 63944655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63947383 63947490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63949037 63949163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63962058 63962443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63965835 63965966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63968957 63968991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63972166 63972244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63981646 63981887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63983864 63983999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2934 nt):
ATGGCTTCAAGCCACAGTTCTTCACCAGTGCCTCAAGGAAGCAGCAGTGATGTTTTCTTTAAAATAGAGG
TAGATCCGTCAAAACACATTCGACCTGTGCCATCACTGCCAGATGTGTGTCCCAAGGAACCCACAGGTGA
TTCACATAGTTTATATGTTGCCCCATCTCTAGTTACAGATCAACATAGATGGACTGTATATCATTCCAAA
GTAAATCTCCCAGCAGCATTAAACGATCCTAGATTAGCAAAAAGAGAATCTGACTTCTTCACAAAAACAT
GGGGATTGGACTTTGTGGACACTGAAGTCATACCTTCATTCTACCTCCCACAGATCAGCAAGGAACATTT
TACAGTATATCAACAGGAAATCTCTCAGAGAGAGAAGATTCATGAGAGATGCAAGAATATTTGTCCTCCT
AAAGATACCTTCGAAAGGACTCTTTTACATACTCATGATAAATCCAGGACAGATCTGGAGCAAGTACCTA
AGATTTTTATGAAACCAGATTTTGCCTTGGATGATTCCTTAACTTTTAATTCAGTTTTACCATGGTCTCA
TTTTAATACTGCTGGTGGAAAAGGAAATCGTGATGCAGCTTCCTCAAAGTTGCTTCAAGAAAAGCTGAGC
CATTATCTGGATATTGTGGAAGTAAACATTGCTCACCAGATCTCTCTACGTTCAGAAGCATTTTTTCATG
CAATGACCTCTCAACACGAGTTGCAGGACTACCTCAGGAAAACTTCCCAGGCTGTAAAAATGCTTCGAGA
TAAAATTGCACAGATTGATAAAGTAATGTGTGAAGGATCACTCCACATTTTAAGACTGGCACTTACCAGA
AATAATTGTGTTAAAGTATACAATAAGCTGAAGTTAATGGCCACTGTACACCAGACTCAGCCTACAGTAC
AGGTGTTATTATCTACTTCTGAATTTGTTGGAGCATTGGACTTAATAGCAACAACACAAGAGGTTCTACA
GCAGGAACTTCAGGGCATTCACAGTTTCCGGCATTTGGGATCACAGCTTTGTGAATTAGAAAAACTGATA
GATAAAATGATGATTGCAGAATTTTCTACTTATTCTCACAGTGACTTAAATAGACCACTGGAAGATGACT
GTCAAGTTTTAGAAGAGGAAAGACTAATATCTCTTGTATTTGGACTTTTAAAACAAAGAAAGCTTAATTT
TTTAGAAATCTATGGTGAAAAAATGGTTATTACAGCAAAGAATATCATTAAACAGTGTGTGATTAATAAA
GTTTCACAAACAGAAGAAATAGACACAGATGTTGTTGTGAAGCTTGCAGATCAGATGAGAATGTTGAATT
TTCCCCAGTGGTTTGATCTGCTCAAGGATATTTTCTCTAAGTTTACAATTTTCCTACAGAGAGTGAAGGC
AACATTAAATATCATTCACAGTGTTGTTCTCTCAGTTCTTGACAAAAACCAAAGGACTAGAGAATTGGAA
GAGATTTCACAACAGAAGAATGCTGCAAAAGATAATTCACTGGACACAGAGGTGGCTTATTTAATCCATG
AAGGCATGTTTATAAGTGATGCATTCGGTGAGGGTGAGCTAACACCTATAGCAGTTGACACTACCTCTCA
AAGAAATGCATCTCCAAATAGTGAGCCCTGCAGCAGTGATTCTGTATCCGAGCCAGAATGTACTACTGAT
TCTTCATCCAGCAAAGAGCACACATCATCATCTGCTATTCCAGGAGGTGTGGATATTATGGTCAGTGAAG
ATATGAAATTAACTGACTCAGAGCTAGGAAAGCTGGCAAATAATATCCAGGAATTATTATATAGTGCCTC
AGATATATGCCATGATCGAGCTGTCAAATTTCTCATGTCAAGAGCAAAGGATGGTTTTCTTGAGAAGCTA
AATTCCATGGAATTCATAACACTTTCTAGATTAATGGAAACATTCATTTTAGACACCGAACAGATCTGTG
GAAGAAAAAGCACGTCATTACTTGGAGCACTTCAGAGCCAAGCTATTAAGTTTGTAAATAGGTTTCATGA
AGAGAGAAAAACCAAGCTCAGCCTCCTCTTAGACAATGAGCGCTGGAAGCAAGCAGATGTTCCTGCAGAA
TTTCAGGATCTTGTTGATTCTCTGTCAGATGGGAAGATTGCTTTACCTGAAAAAAAATCAGGAGCCACAG
AAGAAAGGAAACCAGCTGAAGTTCTTATTGTCGAGGGACAACAGTATGCAGTTGTTGGAACCGTATTGCT
GTTAATAAGAATTATCCTTGAATATTGCCAGTGTGTGGATAACATCCCATCTGTTACTACTGACATGCTT
ACTCGTCTGTCAGATTTATTGAAGTACTTCAATTCAAGAAGTTGCCAGTTAGTTCTTGGAGCTGGTGCAC
TGCAAGTTGTTGGACTAAAAACGATAACTACAAAAAATTTGGCTCTTTCTTCACGATGTTTGCAGTTAAT
TGTGCACTACATTCCTGTGATCCGGGCTCATTTTGAAGCTCGACTACCACCTAAGCAATATAGCATGCTT
AGGCATTTTGATCATATCACTAAGGACTACCATGATCACATAGCTGAAATATCAGCTAAGCTTGTAGCGA
TAATGGATAGCTTATTTGACAAGCTGTTATCTAAGTATGAAGTGAAGGCTCCTGTTCCTTCTGCCTGTTT
CAGGAATATTTGTAAGCAAATGACAAAAATGCACGAAGCTATATTTGATCTCCTTCCAGAAGAACAAACA
CAGATGTTATTTTTAAGAATTAATGCAAGTTATAAACTCCACTTGAAAAAGCAGTTATCTCACTTAAATG
TGATAAATGATGGAGGACCTCAAAATGGGTTGGTCACAGCAGATGTAGCTTTTTACACTGGAAATCTTCA
AGCCTTAAAAGGCCTTAAAGATTTGGACCTAAATATGGCCGAAATTTGGGAGCAGAAGAGGTGA

Translation (977 aa):
MASSHSSSPVPQGSSSDVFFKIEVDPSKHIRPVPSLPDVCPKEPTGDSHSLYVAPSLVTDQHRWTVYHSK
VNLPAALNDPRLAKRESDFFTKTWGLDFVDTEVIPSFYLPQISKEHFTVYQQEISQREKIHERCKNICPP
KDTFERTLLHTHDKSRTDLEQVPKIFMKPDFALDDSLTFNSVLPWSHFNTAGGKGNRDAASSKLLQEKLS
HYLDIVEVNIAHQISLRSEAFFHAMTSQHELQDYLRKTSQAVKMLRDKIAQIDKVMCEGSLHILRLALTR
NNCVKVYNKLKLMATVHQTQPTVQVLLSTSEFVGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLI
DKMMIAEFSTYSHSDLNRPLEDDCQVLEEERLISLVFGLLKQRKLNFLEIYGEKMVITAKNIIKQCVINK
VSQTEEIDTDVVVKLADQMRMLNFPQWFDLLKDIFSKFTIFLQRVKATLNIIHSVVLSVLDKNQRTRELE
EISQQKNAAKDNSLDTEVAYLIHEGMFISDAFGEGELTPIAVDTTSQRNASPNSEPCSSDSVSEPECTTD
SSSSKEHTSSSAIPGGVDIMVSEDMKLTDSELGKLANNIQELLYSASDICHDRAVKFLMSRAKDGFLEKL
NSMEFITLSRLMETFILDTEQICGRKSTSLLGALQSQAIKFVNRFHEERKTKLSLLLDNERWKQADVPAE
FQDLVDSLSDGKIALPEKKSGATEERKPAEVLIVEGQQYAVVGTVLLLIRIILEYCQCVDNIPSVTTDML
TRLSDLLKYFNSRSCQLVLGAGALQVVGLKTITTKNLALSSRCLQLIVHYIPVIRAHFEARLPPKQYSML
RHFDHITKDYHDHIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSACFRNICKQMTKMHEAIFDLLPEEQT
QMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKDLDLNMAEIWEQKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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