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Report for CCDS42068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42068.1 Public Homo sapiens 15 CFAP161 24 110 108 CCDS HistoryNCBI Gene:161502Re-query CCDS DB by CCDS ID:42068.1Re-query CCDS DB by GeneID:161502See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 42068.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000286732.5 ENSP00000286732.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000286732.5Link to Ensembl Protein Viewer:ENSP00000286732.4Re-query CCDS DB by Nucleotide ID:ENST00000286732Re-query CCDS DB by Protein ID:ENSP00000286732
Original member Current member NCBI NM_173528.4 NP_775799.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173528.4Link to Protein Sequence:NP_775799.2Re-query CCDS DB by Nucleotide ID:NM_173528Re-query CCDS DB by Protein ID:NP_775799Link to BLAST:NP_775799.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775799.2 301 Q6P656-1 301 100% 0 0

Chromosomal Locations for CCDS 42068.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 81134330 81134398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81135270 81135359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81136516 81136748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81138051 81138135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81143662 81143820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81147858 81147931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81148338 81148533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGGCGCAGAACGTGTATGGTCCGGGAGTCCGGATAGGCAACTGGAATGAGGATGTCTACCTGGAGGAGG
AGCTCATGAAAGACTTCTTAGAGAAGAGAGACAAGGGGAAACTTCTCATACAGAGAAGTAGAAGACTAAA
ACAGAATCTCTTGAGACCGATGCAACTTTCCGTAACTGAAGATGGCTATATTCATTACGGTGACAAAGTG
ATGCTTGTGAATCCTGATGATCCTGACACAGAAGCTGATGTGTTTCTGCGTGGGGACCTGAGCCTGTGTA
TGACTCCAGATGAAATTCAGTCCCATCTGAAAGACGAATTAGAGGTACCCTGTGGCCTGAGCGCAGTTCA
AGCCAAGACCCCAATTGGCAGAAACACTTTTATCATTTTGAGTGTACACAGAGATGCCACTGGTCAAGTC
CTTAGATATGGGCAGGACTTTTGCCTGGGGATAACAGGAGGATTTGACAACAAAATGTTGTATTTGTCAA
GTGACCACAGGACCCTCCTGAAATCGTCTAAGAGGTCTTGGCTCCAGGAAGTGTACCTAACAGATGAGGT
CTCCCATGTGAACTGCTGGCAGGCTGCCTTCCCTGACCCCCAGTTACGCCTGGAATATGAAGGCTTCCCC
GTCCCGGCAAATGCTAAAATTCTCATCAATCACTGTCACACAAATCGGGGACTGGCAGCCCACCGGCATC
TTTTCTTAAGCACCTATTTTGGAAAGGAGGCTGAGGTTGTAGCTCACACATACCTGGATTCACATAGAGT
TGAGAAACCAAGGAACCACTGGATGTTGGTTACTGGGAATCCCAGGGATGCCTCGTCCTCCATGTTGGAT
CTGCCCAAACCACCCACAGAGGACACTCGAGCCATGGAGCAGGCCATGGGCCTTGACACGCAGTAA

Translation (301 aa):
MAQNVYGPGVRIGNWNEDVYLEEELMKDFLEKRDKGKLLIQRSRRLKQNLLRPMQLSVTEDGYIHYGDKV
MLVNPDDPDTEADVFLRGDLSLCMTPDEIQSHLKDELEVPCGLSAVQAKTPIGRNTFIILSVHRDATGQV
LRYGQDFCLGITGGFDNKMLYLSSDHRTLLKSSKRSWLQEVYLTDEVSHVNCWQAAFPDPQLRLEYEGFP
VPANAKILINHCHTNRGLAAHRHLFLSTYFGKEAEVVAHTYLDSHRVEKPRNHWMLVTGNPRDASSSMLD
LPKPPTEDTRAMEQAMGLDTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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