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Report for CCDS318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
318.1 Public Homo sapiens 1 PTAFR 24 110 108 CCDS HistoryNCBI Gene:5724Re-query CCDS DB by CCDS ID:318.1Re-query CCDS DB by GeneID:5724See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 318.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305392.3 ENSP00000301974.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000305392.3Link to Ensembl Protein Viewer:ENSP00000301974.3Re-query CCDS DB by Nucleotide ID:ENST00000305392Re-query CCDS DB by Protein ID:ENSP00000301974
Original member Current member EBI ENST00000373857.8 ENSP00000362965.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373857.8Link to Ensembl Protein Viewer:ENSP00000362965.3Re-query CCDS DB by Nucleotide ID:ENST00000373857Re-query CCDS DB by Protein ID:ENSP00000362965
Original member Current member EBI ENST00000539896.1 ENSP00000442658.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539896.1Link to Ensembl Protein Viewer:ENSP00000442658.1Re-query CCDS DB by Nucleotide ID:ENST00000539896Re-query CCDS DB by Protein ID:ENSP00000442658
Original member Current member NCBI NM_000952.5 NP_000943.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000952.5Link to Protein Sequence:NP_000943.1Re-query CCDS DB by Nucleotide ID:NM_000952Re-query CCDS DB by Protein ID:NP_000943Link to BLAST:NP_000943.1
Original member Current member NCBI NM_001164721.2 NP_001158193.1 Accepted alive Link to Nucleotide Sequence:NM_001164721.2Link to Protein Sequence:NP_001158193.1Re-query CCDS DB by Nucleotide ID:NM_001164721Re-query CCDS DB by Protein ID:NP_001158193Link to BLAST:NP_001158193.1
Original member Current member NCBI NM_001164722.3 NP_001158194.1 Accepted alive Link to Nucleotide Sequence:NM_001164722.3Link to Protein Sequence:NP_001158194.1Re-query CCDS DB by Nucleotide ID:NM_001164722Re-query CCDS DB by Protein ID:NP_001158194Link to BLAST:NP_001158194.1
Original member Current member NCBI NM_001164723.3 NP_001158195.1 Accepted alive Link to Nucleotide Sequence:NM_001164723.3Link to Protein Sequence:NP_001158195.1Re-query CCDS DB by Nucleotide ID:NM_001164723Re-query CCDS DB by Protein ID:NP_001158195Link to BLAST:NP_001158195.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000943.1 342 P25105 342 100% 0 0
NP_001158193.1 342 P25105 342 100% 0 0
NP_001158194.1 342 P25105 342 100% 0 0
NP_001158195.1 342 P25105 342 100% 0 0

Chromosomal Locations for CCDS 318.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 28149993 28151021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGGAGCCACATGACTCCTCCCACATGGACTCTGAGTTCCGATACACTCTCTTCCCGATTGTTTACAGCA
TCATCTTTGTGCTCGGGGTCATTGCTAATGGCTACGTGCTGTGGGTCTTTGCCCGCCTGTACCCTTGCAA
GAAATTCAATGAGATAAAGATCTTCATGGTGAACCTCACCATGGCGGACATGCTCTTCTTGATCACCCTG
CCACTTTGGATTGTCTACTACCAAAACCAGGGCAACTGGATACTCCCCAAATTCCTGTGCAACGTGGCTG
GCTGCCTTTTCTTCATCAACACCTACTGCTCTGTGGCCTTCCTGGGCGTCATCACTTATAACCGCTTCCA
GGCAGTAACTCGGCCCATCAAGACTGCTCAGGCCAACACCCGCAAGCGTGGCATCTCTTTGTCCTTGGTC
ATCTGGGTGGCCATTGTGGGAGCTGCATCCTACTTCCTCATCCTGGACTCCACCAACACAGTGCCCGACA
GTGCTGGCTCAGGCAACGTCACTCGCTGCTTTGAGCATTACGAGAAGGGCAGCGTGCCAGTCCTCATCAT
CCACATCTTCATCGTGTTCAGCTTCTTCCTGGTCTTCCTCATCATCCTCTTCTGCAACCTGGTCATCATC
CGTACCTTGCTCATGCAGCCGGTGCAGCAGCAGCGCAACGCTGAAGTCAAGCGCCGGGCGCTGTGGATGG
TGTGCACGGTCTTGGCGGTGTTCATCATCTGCTTCGTGCCCCACCACGTGGTGCAGCTGCCCTGGACCCT
TGCTGAGCTGGGCTTCCAGGACAGCAAATTCCACCAGGCCATTAATGATGCACATCAGGTCACCCTCTGC
CTCCTTAGCACCAACTGTGTCTTAGACCCTGTTATCTACTGTTTCCTCACCAAGAAGTTCCGCAAGCACC
TCACCGAAAAGTTCTACAGCATGCGCAGTAGCCGGAAATGCTCCCGGGCCACCACGGATACGGTCACTGA
AGTGGTTGTGCCATTCAACCAGATCCCTGGCAATTCCCTCAAAAATTAG

Translation (342 aa):
MEPHDSSHMDSEFRYTLFPIVYSIIFVLGVIANGYVLWVFARLYPCKKFNEIKIFMVNLTMADMLFLITL
PLWIVYYQNQGNWILPKFLCNVAGCLFFINTYCSVAFLGVITYNRFQAVTRPIKTAQANTRKRGISLSLV
IWVAIVGAASYFLILDSTNTVPDSAGSGNVTRCFEHYEKGSVPVLIIHIFIVFSFFLVFLIILFCNLVII
RTLLMQPVQQQRNAEVKRRALWMVCTVLAVFIICFVPHHVVQLPWTLAELGFQDSKFHQAINDAHQVTLC
LLSTNCVLDPVIYCFLTKKFRKHLTEKFYSMRSSRKCSRATTDTVTEVVVPFNQIPGNSLKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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