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Report for CCDS1000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1000.1 Public Homo sapiens 1 TUFT1 24 110 108 CCDS HistoryNCBI Gene:7286Re-query CCDS DB by CCDS ID:1000.1Re-query CCDS DB by GeneID:7286See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1000.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368849.8 ENSP00000357842.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368849.8Link to Ensembl Protein Viewer:ENSP00000357842.3Re-query CCDS DB by Nucleotide ID:ENST00000368849Re-query CCDS DB by Protein ID:ENSP00000357842
Original member Current member NCBI NM_020127.3 NP_064512.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020127.3Link to Protein Sequence:NP_064512.1Re-query CCDS DB by Nucleotide ID:NM_020127Re-query CCDS DB by Protein ID:NP_064512Link to BLAST:NP_064512.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064512.1 390 Q9NNX1-1 390 100% 0 0

Chromosomal Locations for CCDS 1000.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151540367 151540426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151562091 151562165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151562585 151562686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151563904 151563990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151564525 151564614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151566163 151566228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151569657 151569770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151574270 151574398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151574911 151575005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151578721 151578826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151579649 151579732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151580942 151581042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151581644 151581707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGAACGGGACGCGGAACTGGTGTACCCTGGTGGACGTGCACCCAGAGGACCAGGCGGCGGGCAGCGTGG
ACATTCTCAGGCTGACTCTCCAGGGTGAACTGACAGGAGATGAACTTGAACACATAGCCCAGAAGGCGGG
CAGGAAGACCTATGCCATGGTGTCCAGCCACTCAGCTGGTCATTCTCTGGCTTCAGAACTGGTGGAGTCC
CATGATGGACATGAGGAGATCATTAAGGTGTACTTGAAGGGGAGGTCTGGAGACAAGATGATTCACGAGA
AGAATATTAACCAGCTGAAGAGTGAGGTCCAGTACATCCAGGAGGCCAGGAACTGCCTACAGAAGCTCCG
GGAGGATATAAGTAGCAAGCTTGACAGGAACCTAGGAGATTCTCTCCATCGACAGGAGATACAGGTGGTG
CTAGAAAAGCCAAATGGCTTTAGTCAGAGTCCCACAGCCCTGTACAGCAGCCCACCTGAGGTGGACACCT
GTATAAATGAGGATGTTGAGAGCTTGAGGAAGACGGTGCAGGACTTGCTGGCCAAGCTTCAGGAGGCCAA
GCGGCAACACCAGTCAGACTGTGTGGCTTTTGAGGTCACACTCAGCCGGTACCAGAGGGAAGCAGAACAA
AGTAATGTGGCCCTTCAGAGAGAGGAGGACAGAGTGGAGCAGAAAGAGGCAGAAGTCGGAGAGCTGCAGA
GGCGCTTGCTAGGGATGGAGACGGAGCATCAGGCCTTACTGGCGAAAGTGAGGGAAGGGGAGGTGGCCCT
AGAGGAACTTCGGAGCAACAATGCTGACTGCCAAGCAGAACGAGAAAAGGCTGCTACCCTGGAAAAGGAA
GTGGCCGGGTTGCGGGAGAAGATCCACCACTTGGATGACATGCTCAAGAGCCAGCAGCGGAAAGTCCGGC
AAATGATAGAGCAGCTCCAGAATTCAAAAGCTGTGATCCAGTCAAAGGACGCCACCATCCAGGAGCTCAA
GGAGAAAATCGCCTATCTGGAGGCAGAGAATTTAGAGATGCATGACCGGATGGAACACCTGATAGAAAAA
CAAATCAGTCATGGCAACTTCAGCACCCAGGCCCGGGCCAAGACAGAGAACCCGGGCAGTATTAGGATAT
CCAAGCCGCCTAGCCCGAAGCCCATGCCTGTCATCCGAGTGGTGGAAACCTGA

Translation (390 aa):
MNGTRNWCTLVDVHPEDQAAGSVDILRLTLQGELTGDELEHIAQKAGRKTYAMVSSHSAGHSLASELVES
HDGHEEIIKVYLKGRSGDKMIHEKNINQLKSEVQYIQEARNCLQKLREDISSKLDRNLGDSLHRQEIQVV
LEKPNGFSQSPTALYSSPPEVDTCINEDVESLRKTVQDLLAKLQEAKRQHQSDCVAFEVTLSRYQREAEQ
SNVALQREEDRVEQKEAEVGELQRRLLGMETEHQALLAKVREGEVALEELRSNNADCQAEREKAATLEKE
VAGLREKIHHLDDMLKSQQRKVRQMIEQLQNSKAVIQSKDATIQELKEKIAYLEAENLEMHDRMEHLIEK
QISHGNFSTQARAKTENPGSIRISKPPSPKPMPVIRVVET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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