NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42988.1 Public Homo sapiens 22 DDTL 24 110 108 CCDS HistoryNCBI Gene:100037417Re-query CCDS DB by CCDS ID:42988.1Re-query CCDS DB by GeneID:100037417See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42988.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000215770.6 ENSP00000215770.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000215770.6Link to Ensembl Protein Viewer:ENSP00000215770.5Re-query CCDS DB by Nucleotide ID:ENST00000215770Re-query CCDS DB by Protein ID:ENSP00000215770
Original member Current member NCBI NM_001084393.2 NP_001077862.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001084393.2Link to Protein Sequence:NP_001077862.1Re-query CCDS DB by Nucleotide ID:NM_001084393Re-query CCDS DB by Protein ID:NP_001077862Link to BLAST:NP_001077862.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077862.1 134 A6NHG4 134 100% 0 0

Chromosomal Locations for CCDS 42988.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 23966915 23967022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23967386 23967561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23971286 23971406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGCCGTTCCTGGAGCTGGACACGAATTTGCCCGCCAACCGAGTGCCCGCGGGGCTGGAGAAACGACTCT
GCGCCGCCGCTGCCTCCATCCTGGGCAAACCTGCGGACCGCGTGAACGTGACGGTACGGCCGGGCCTGGC
CATGGCGCTGAGCGGGTCCACCGAGCCCTGCGCGCAGCTGTCCATCTCCTCCATCGGCGTAGTGGGCACC
GCCGAGGACAACCGCAGCCACAGCGCCCACTTCTTTGAGTTTCTCACCAAGGAGCTAGCCCTGGGCCAGG
ACCGGTTCCCTACGGTCTTATCCACCAGCCCTGCTGCCCATGGTGGCCCCAGATGCCCAGGAGAGATAAT
AGAAGGTAAGAAGTCATGTTTGAATGAGGAAGCTCTCTTCATTTATTTCATATGA

Translation (134 aa):
MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVGT
AEDNRSHSAHFFEFLTKELALGQDRFPTVLSTSPAAHGGPRCPGEIIEGKKSCLNEEALFIYFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH