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Report for CCDS8804.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8804.1 Public Homo sapiens 12 TMT1A 24 110 108 CCDS HistoryNCBI Gene:25840Re-query CCDS DB by CCDS ID:8804.1Re-query CCDS DB by GeneID:25840See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8804.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332160.5 ENSP00000331787.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332160.5Link to Ensembl Protein Viewer:ENSP00000331787.4Re-query CCDS DB by Nucleotide ID:ENST00000332160Re-query CCDS DB by Protein ID:ENSP00000331787
Original member Current member EBI ENST00000547104.1 ENSP00000447542.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000547104.1Link to Ensembl Protein Viewer:ENSP00000447542.1Re-query CCDS DB by Nucleotide ID:ENST00000547104Re-query CCDS DB by Protein ID:ENSP00000447542
Original member Current member EBI ENST00000548553.1 ENSP00000448785.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000548553.1Link to Ensembl Protein Viewer:ENSP00000448785.1Re-query CCDS DB by Nucleotide ID:ENST00000548553Re-query CCDS DB by Protein ID:ENSP00000448785
Original member Current member NCBI NM_014033.4 NP_054752.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014033.4Link to Protein Sequence:NP_054752.3Re-query CCDS DB by Nucleotide ID:NM_014033Re-query CCDS DB by Protein ID:NP_054752Link to BLAST:NP_054752.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054752.3 244 Q9H8H3 244 100% 0 0

Chromosomal Locations for CCDS 8804.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 50925039 50925536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50929914 50930150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGGAGCTTACCATCTTTATCCTGAGACTGGCCATTTACATCCTGACATTTCCCTTGTACCTGCTGAACT
TTCTGGGCTTGTGGAGCTGGATATGCAAAAAATGGTTCCCCTACTTCTTGGTGAGGTTCACTGTGATATA
CAACGAACAGATGGCAAGCAAGAAGCGGGAGCTCTTCAGTAACCTGCAGGAGTTTGCGGGCCCCTCCGGG
AAACTCTCCCTGCTGGAAGTGGGCTGTGGCACGGGGGCCAACTTCAAGTTCTACCCACCTGGGTGCAGGG
TGACCTGTATTGACCCCAACCCCAACTTTGAGAAGTTTTTGATCAAGAGCATTGCAGAGAACCGACACCT
GCAGTTTGAGCGCTTTGTGGTAGCTGCCGGGGAGAACATGCACCAGGTGGCTGATGGCTCTGTGGATGTG
GTGGTCTGCACCCTGGTGCTGTGCTCTGTGAAGAACCAGGAGCGGATTCTCCGCGAGGTGTGCAGAGTGC
TGAGACCGGGAGGGGCTTTCTATTTCATGGAGCATGTGGCAGCTGAGTGTTCGACTTGGAATTACTTCTG
GCAACAAGTCCTGGATCCTGCCTGGCACCTTCTGTTTGATGGGTGCAACCTGACCAGAGAGAGCTGGAAG
GCCCTGGAGCGGGCCAGCTTCTCTAAGCTGAAGCTGCAGCACATCCAGGCCCCACTGTCCTGGGAGTTGG
TGCGCCCTCATATCTATGGATATGCTGTGAAATAG

Translation (244 aa):
MELTIFILRLAIYILTFPLYLLNFLGLWSWICKKWFPYFLVRFTVIYNEQMASKKRELFSNLQEFAGPSG
KLSLLEVGCGTGANFKFYPPGCRVTCIDPNPNFEKFLIKSIAENRHLQFERFVVAAGENMHQVADGSVDV
VVCTLVLCSVKNQERILREVCRVLRPGGAFYFMEHVAAECSTWNYFWQQVLDPAWHLLFDGCNLTRESWK
ALERASFSKLKLQHIQAPLSWELVRPHIYGYAVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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