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Report for CCDS11606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11606.1 Public Homo sapiens 17 SUPT4H1 24 110 108 CCDS HistoryNCBI Gene:6827Re-query CCDS DB by CCDS ID:11606.1Re-query CCDS DB by GeneID:6827See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11606.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000225504.8 ENSP00000225504.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000225504.8Link to Ensembl Protein Viewer:ENSP00000225504.3Re-query CCDS DB by Nucleotide ID:ENST00000225504Re-query CCDS DB by Protein ID:ENSP00000225504
Original member Current member EBI ENST00000580947.1 ENSP00000462670.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000580947.1Link to Ensembl Protein Viewer:ENSP00000462670.1Re-query CCDS DB by Nucleotide ID:ENST00000580947Re-query CCDS DB by Protein ID:ENSP00000462670
Original member Current member NCBI NM_003168.3 NP_003159.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003168.3Link to Protein Sequence:NP_003159.1Re-query CCDS DB by Nucleotide ID:NM_003168Re-query CCDS DB by Protein ID:NP_003159Link to BLAST:NP_003159.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003159.1 117 P63272 117 100% 0 0

Chromosomal Locations for CCDS 11606.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 58346246 58346313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58347188 58347241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58347529 58347584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58351402 58351508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58352067 58352135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGGCCCTGGAGACGGTGCCGAAGGACCTGCGGCATCTGCGGGCCTGTTTGCTGTGTTCGCTGGTCAAGA
CTATAGACCAGTTTGAATATGATGGTTGTGACAATTGTGATGCATATCTACAAATGAAGGGTAACCGAGA
GATGGTATATGACTGCACTAGCTCTTCCTTTGATGGAATCATTGCGATGATGAGTCCAGAGGACAGCTGG
GTCTCCAAGTGGCAGCGAGTCAGTAACTTTAAGCCAGGTGTATATGCGGTGTCAGTCACTGGTCGCCTGC
CCCAAGGAATCGTGCGGGAGCTGAAAAGTCGAGGAGTGGCCTACAAATCCAGAGACACAGCTATAAAGAC
CTAG

Translation (117 aa):
MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSW
VSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTAIKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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