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Report for CCDS46996.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46996.1 Public Homo sapiens 4 RNF212 24 110 108 CCDS HistoryNCBI Gene:285498Re-query CCDS DB by CCDS ID:46996.1Re-query CCDS DB by GeneID:285498See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46996.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000433731.7 ENSP00000389709.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000433731.7Link to Ensembl Protein Viewer:ENSP00000389709.2Re-query CCDS DB by Nucleotide ID:ENST00000433731Re-query CCDS DB by Protein ID:ENSP00000389709
Original member Current member NCBI NM_001131034.4 NP_001124506.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001131034.4Link to Protein Sequence:NP_001124506.1Re-query CCDS DB by Nucleotide ID:NM_001131034Re-query CCDS DB by Protein ID:NP_001124506Link to BLAST:NP_001124506.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124506.1 297 Q495C1-1 297 100% 0 0

Chromosomal Locations for CCDS 46996.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 1072874 1073193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1073599 1073662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1079643 1079688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1081419 1081467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1081567 1081619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1085896 1085954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1090782 1090838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1096765 1096839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1108343 1108404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1113356 1113464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGCCAACTGGGTGTTCTGTAATCGCTGCTTCCAGCCGCCCCACAGGACGTCGTGCTTCAGCCTCACCA
ACTGCGGGCACGTGTACTGCGACGCCTGCCTCGGCAAAGGTAAAAAGAATGAATGCTTGATTTGTAAAGC
TCCTTGTCGTACAGTTTTGCTTTCAAAGCATACCGACGCAGATATCCAGGCATTCTTCATGAGCATAGAC
AGTCTGTGTAAGAAGTACTCCAGGGAAACCTCCCAGATTTTAGAATTTCAAGAAAAACACAGGAAGAGAT
TGTTAGCCTTCTATAGAGAAAAGATTTCTAGGTTGGAAGAATCCCTTAGGAAGTCAGTGCTGCAGATAGA
ACAACTACAAAGTATGAGATCATCACAACAAACAGCTTTCAGCACAATAAAAAGTTCAGTTTCAACAAAA
CCACACGGATGCCTGCTGCCACCTCACTCATCAGCCCCCGACAGACTGGAGTCGATGGAAGTTGATCTCT
CTCCTTCTCCGATTAGAAAATCTGAGATAGCAGCCGGCCCTGCGAGAATCTCCATGATTAGTCCACCTCA
AGATGGACGAATGGGGCCACATCTAACAGCTTCTTTCTGTTTCATCCCATGGTTGACCTTGTCTAAGCCC
CCTGTGCCCGGAGAGTGTGTCATTTCCAGAGGTTCACCATGTTTCTGCATAGACGTCTGTCCTCACTGGC
TGCTCCTCCTAGCGTTCAGTTCTGGAAGGCACGGGGAACTCACCAACTCTAAAACACTTCCAATATATGC
TGAGGTACAAAGGGCCGTCTTGTTTCCGTTCCAGCAGGCTGAGGGCACCCTGGACACGTTCAGAACACCC
GCTGTGTCTGTTGTGTTTCCTCTTTGCCAATTTGAAAGGAAAAAGTCATTTTGA

Translation (297 aa):
MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDADIQAFFMSID
SLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQSMRSSQQTAFSTIKSSVSTK
PHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMGPHLTASFCFIPWLTLSKP
PVPGECVISRGSPCFCIDVCPHWLLLLAFSSGRHGELTNSKTLPIYAEVQRAVLFPFQQAEGTLDTFRTP
AVSVVFPLCQFERKKSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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