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Report for CCDS8784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8784.1 Public Homo sapiens 12 TROAP 24 110 108 CCDS HistoryNCBI Gene:10024Re-query CCDS DB by CCDS ID:8784.1Re-query CCDS DB by GeneID:10024See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8784.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257909.8 ENSP00000257909.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000257909.8Link to Ensembl Protein Viewer:ENSP00000257909.3Re-query CCDS DB by Nucleotide ID:ENST00000257909Re-query CCDS DB by Protein ID:ENSP00000257909
Original member Current member NCBI NM_005480.4 NP_005471.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005480.4Link to Protein Sequence:NP_005471.3Re-query CCDS DB by Nucleotide ID:NM_005480Re-query CCDS DB by Protein ID:NP_005471Link to BLAST:NP_005471.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005471.3 778 Q12815-1 778 100% 0 0

Chromosomal Locations for CCDS 8784.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 49323609 49323752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49323845 49324037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49325501 49325658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49325747 49325884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49326076 49326158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49326668 49326720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49327209 49327330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49328927 49329055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49329161 49329244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49329395 49329454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49329857 49329991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49330145 49330943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49331214 49331407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49331573 49331617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2337 nt):
ATGACCACCCGGCAAGCCACGAAGGATCCCCTCCTCCGGGGTGTATCTCCTACCCCTAGCAAGATTCCGG
TACGCTCTCAGAAACGCACGCCTTTCCCCACTGTTACATCGTGCGCCGTGGACCAGGAGAACCAAGATCC
AAGGAGATGGGTGCAGAAACCACCGCTCAATATTCAACGCCCCCTCGTTGATTCAGCAGGCCCCAGGCCG
AAAGCCAGGCACCAGGCAGAGACATCACAAAGATTGGTGGGGATCAGTCAGCCTCGGAACCCCTTGGAAG
AGCTCAGGCCTAGCCCTAGGGGTCAAAATGTGGGGCCTGGGCCCCCTGCCCAGACAGAGGCTCCAGGGAC
CATAGAGTTTGTGGCTGACCCTGCAGCCCTGGCCACCATCCTGTCAGGTGAGGGTGTGAAGAGCTGTCAC
CTGGGGCGCCAGCCTAGTCTGGCTAAAAGAGTACTGGTTCGAGGAAGTCAGGGAGGCACCACCCAGAGGG
TCCAGGGTGTTCGGGCCTCTGCATATTTGGCCCCCAGAACCCCCACCCACCGACTGGACCCTGCCAGGGC
TTCCTGCTTCTCTAGGCTGGAGGGACCAGGACCTCGAGGCCGGACATTGTGCCCCCAGAGGCTACAGGCT
CTGATTTCACCTTCAGGACCTTCCTTTCACCCTTCCACTCGCCCCAGTTTCCAGGAGCTAAGAAGGGAGA
CAGCTGGCAGCAGCCGGACTTCAGTGAGCCAGGCCTCAGGATTGCTCCTGGAGACCCCAGTCCAGCCTGC
TTTCTCTCTTCCTAAAGGAGAACGCGAGGTTGTCACTCACTCAGATGAAGGAGGTGTGGCCTCTCTTGGT
CTGGCCCAGCGAGTACCATTAAGAGAAAACCGAGAAATGTCACATACCAGGGACAGCCATGACTCCCACC
TGATGCCCTCCCCTGCCCCTGTGGCCCAGCCCTTGCCTGGCCATGTGGTGCCATGTCCATCACCCTTTGG
ACGGGCTCAGCGTGTACCCTCCCCAGGCCCTCCAACTCTGACCTCATATTCAGTGTTGCGGCGTCTCACC
GTTCAACCTAAAACCCGGTTCACACCCATGCCATCAACCCCCAGAGTTCAGCAGGCCCAGTGGCTGCGTG
GTGTCTCCCCTCAGTCCTGCTCTGAAGATCCTGCCCTGCCCTGGGAGCAGGTTGCCGTCCGGTTGTTTGA
CCAGGAGAGTTGTATAAGGTCACTGGAGGGTTCTGGGAAACCACCGGTGGCCACTCCTTCTGGACCCCAC
TCTAACAGAACCCCCAGCCTCCAGGAGGTGAAGATTCAACGCATCGGTATCCTGCAACAGCTGTTGAGAC
AGGAAGTAGAGGGGCTGGTAGGGGGCCAGTGTGTCCCTCTTAATGGAGGCTCTTCTCTGGATATGGTTGA
ACTTCAGCCCCTGCTGACTGAGATTTCTAGAACTCTGAATGCCACAGAGCATAACTCTGGGACTTCCCAC
CTTCCTGGACTGTTAAAACACTCAGGGCTGCCAAAGCCCTGTCTTCCAGAGGAGTGCGGGGAACCACAGC
CCTGCCCTCCGGCAGAGCCTGGGCCCCCAGAGGCCTTCTGTAGGAGTGAGCCTGAGATACCAGAGCCCTC
CCTCCAGGAACAGCTTGAAGTACCAGAGCCCTACCCTCCAGCAGAACCCAGGCCCCTAGAGTCCTGCTGT
AGGAGTGAGCCTGAGATACCGGAGTCCTCTCGCCAGGAACAGCTTGAGGTACCTGAGCCCTGCCCTCCAG
CAGAACCCAGGCCCCTAGAGTCCTACTGTAGGATTGAGCCTGAGATACCGGAGTCCTCTCGCCAGGAACA
GCTTGAGGTACCTGAGCCCTGCCCTCCAGCAGAACCCGGGCCCCTTCAGCCCAGCACCCAGGGGCAGTCT
GGACCCCCAGGGCCCTGCCCTAGGGTAGAGCTGGGGGCATCAGAGCCCTGCACCCTGGAACATAGAAGTC
TAGAGTCCAGTCTACCACCCTGCTGCAGTCAGTGGGCTCCAGCAACCACCAGCCTGATCTTCTCTTCCCA
ACACCCGCTTTGTGCCAGCCCCCCTATCTGCTCACTCCAGTCTTTGAGACCCCCAGCAGGCCAGGCAGGC
CTCAGCAATCTGGCCCCTCGAACCCTAGCCCTGAGGGAGCGCCTCAAATCGTGTTTAACCGCCATCCACT
GCTTCCACGAGGCTCGTCTGGACGATGAGTGTGCCTTTTACACCAGCCGAGCCCCTCCCTCAGGCCCCAC
CCGGGTCTGCACCAACCCTGTGGCTACATTACTCGAATGGCAGGATGCCCTGTGTTTCATTCCAGTTGGT
TCTGCTGCCCCCCAGGGCTCTCCATGA

Translation (778 aa):
MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQRPLVDSAGPRP
KARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTEAPGTIEFVADPAALATILSGEGVKSCH
LGRQPSLAKRVLVRGSQGGTTQRVQGVRASAYLAPRTPTHRLDPARASCFSRLEGPGPRGRTLCPQRLQA
LISPSGPSFHPSTRPSFQELRRETAGSSRTSVSQASGLLLETPVQPAFSLPKGEREVVTHSDEGGVASLG
LAQRVPLRENREMSHTRDSHDSHLMPSPAPVAQPLPGHVVPCPSPFGRAQRVPSPGPPTLTSYSVLRRLT
VQPKTRFTPMPSTPRVQQAQWLRGVSPQSCSEDPALPWEQVAVRLFDQESCIRSLEGSGKPPVATPSGPH
SNRTPSLQEVKIQRIGILQQLLRQEVEGLVGGQCVPLNGGSSLDMVELQPLLTEISRTLNATEHNSGTSH
LPGLLKHSGLPKPCLPEECGEPQPCPPAEPGPPEAFCRSEPEIPEPSLQEQLEVPEPYPPAEPRPLESCC
RSEPEIPESSRQEQLEVPEPCPPAEPRPLESYCRIEPEIPESSRQEQLEVPEPCPPAEPGPLQPSTQGQS
GPPGPCPRVELGASEPCTLEHRSLESSLPPCCSQWAPATTSLIFSSQHPLCASPPICSLQSLRPPAGQAG
LSNLAPRTLALRERLKSCLTAIHCFHEARLDDECAFYTSRAPPSGPTRVCTNPVATLLEWQDALCFIPVG
SAAPQGSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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