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Report for CCDS13685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13685.1 Public Homo sapiens 21 TFF1 24 110 108 CCDS HistoryNCBI Gene:7031Re-query CCDS DB by CCDS ID:13685.1Re-query CCDS DB by GeneID:7031See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13685.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291527.3 ENSP00000291527.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000291527.3Link to Ensembl Protein Viewer:ENSP00000291527.2Re-query CCDS DB by Nucleotide ID:ENST00000291527Re-query CCDS DB by Protein ID:ENSP00000291527
Original member Current member NCBI NM_003225.3 NP_003216.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003225.3Link to Protein Sequence:NP_003216.1Re-query CCDS DB by Nucleotide ID:NM_003225Re-query CCDS DB by Protein ID:NP_003216Link to BLAST:NP_003216.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003216.1 84 P04155 84 100% 0 0

Chromosomal Locations for CCDS 13685.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 42362479 42362495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42363255 42363407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42366411 42366495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (255 nt):
ATGGCCACCATGGAGAACAAGGTGATCTGCGCCCTGGTCCTGGTGTCCATGCTGGCCCTCGGCACCCTGG
CCGAGGCCCAGACAGAGACGTGTACAGTGGCCCCCCGTGAAAGACAGAATTGTGGTTTTCCTGGTGTCAC
GCCCTCCCAGTGTGCAAATAAGGGCTGCTGTTTCGACGACACCGTTCGTGGGGTCCCCTGGTGCTTCTAT
CCTAATACCATCGACGTCCCTCCAGAAGAGGAGTGTGAATTTTAG

Translation (84 aa):
MATMENKVICALVLVSMLALGTLAEAQTETCTVAPRERQNCGFPGVTPSQCANKGCCFDDTVRGVPWCFY
PNTIDVPPEEECEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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