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Report for CCDS106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
106.1 Public Homo sapiens 1 CTNNBIP1 24 110 108 CCDS HistoryNCBI Gene:56998Re-query CCDS DB by CCDS ID:106.1Re-query CCDS DB by GeneID:56998See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 106.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377256.1 ENSP00000366466.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377256.1Link to Ensembl Protein Viewer:ENSP00000366466.1Re-query CCDS DB by Nucleotide ID:ENST00000377256Re-query CCDS DB by Protein ID:ENSP00000366466
Original member Current member EBI ENST00000377258.5 ENSP00000366468.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377258.5Link to Ensembl Protein Viewer:ENSP00000366468.1Re-query CCDS DB by Nucleotide ID:ENST00000377258Re-query CCDS DB by Protein ID:ENSP00000366468
Original member Current member EBI ENST00000377263.6 ENSP00000366474.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377263.6Link to Ensembl Protein Viewer:ENSP00000366474.1Re-query CCDS DB by Nucleotide ID:ENST00000377263Re-query CCDS DB by Protein ID:ENSP00000366474
Original member Current member EBI ENST00000400904.7 ENSP00000383696.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400904.7Link to Ensembl Protein Viewer:ENSP00000383696.3Re-query CCDS DB by Nucleotide ID:ENST00000400904Re-query CCDS DB by Protein ID:ENSP00000383696
Original member Current member NCBI NM_001012329.2 NP_001012329.1 Accepted alive Link to Nucleotide Sequence:NM_001012329.2Link to Protein Sequence:NP_001012329.1Re-query CCDS DB by Nucleotide ID:NM_001012329Re-query CCDS DB by Protein ID:NP_001012329Link to BLAST:NP_001012329.1
Original member Current member NCBI NM_020248.3 NP_064633.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020248.3Link to Protein Sequence:NP_064633.1Re-query CCDS DB by Nucleotide ID:NM_020248Re-query CCDS DB by Protein ID:NP_064633Link to BLAST:NP_064633.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012329.1 81 Q9NSA3 81 100% 0 0
NP_064633.1 81 Q9NSA3 81 100% 0 0

Chromosomal Locations for CCDS 106.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 9850718 9850776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9871187 9871277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9871969 9872064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (246 nt):
ATGAACCGCGAGGGAGCTCCCGGGAAGAGTCCGGAGGAGATGTACATTCAGCAGAAGGTCCGAGTGCTGC
TCATGCTGCGGAAGATGGGATCAAACCTGACAGCCAGCGAGGAGGAGTTCCTGCGCACCTATGCAGGGGT
GGTCAACAGCCAGCTCAGCCAGCTGCCTCCGCACTCCATCGACCAGGGTGCAGAGGACGTGGTGATGGCG
TTTTCCAGGTCGGAGACGGAAGACCGGAGGCAGTAG

Translation (81 aa):
MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPPHSIDQGAEDVVMA
FSRSETEDRRQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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