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Report for CCDS12167.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12167.1 Public Homo sapiens 19 CRB3 24 110 108 CCDS HistoryNCBI Gene:92359Re-query CCDS DB by CCDS ID:12167.1Re-query CCDS DB by GeneID:92359See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12167.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308243.7 ENSP00000310123.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000308243.7Link to Ensembl Protein Viewer:ENSP00000310123.6Re-query CCDS DB by Nucleotide ID:ENST00000308243Re-query CCDS DB by Protein ID:ENSP00000310123
Original member Current member EBI ENST00000598494.5 ENSP00000469707.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000598494.5Link to Ensembl Protein Viewer:ENSP00000469707.1Re-query CCDS DB by Nucleotide ID:ENST00000598494Re-query CCDS DB by Protein ID:ENSP00000469707
Original member Current member EBI ENST00000600229.6 ENSP00000472010.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000600229.6Link to Ensembl Protein Viewer:ENSP00000472010.1Re-query CCDS DB by Nucleotide ID:ENST00000600229Re-query CCDS DB by Protein ID:ENSP00000472010
Original member Current member NCBI NM_139161.5 NP_631900.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139161.5Link to Protein Sequence:NP_631900.1Re-query CCDS DB by Nucleotide ID:NM_139161Re-query CCDS DB by Protein ID:NP_631900Link to BLAST:NP_631900.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631900.1 120 Q9BUF7-1 120 100% 0 0

Chromosomal Locations for CCDS 12167.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6464702 6464783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6465545 6465618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6466466 6466672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (363 nt):
ATGGCGAACCCCGGGCTGGGGCTGCTTCTGGCGCTGGGCCTGCCGTTCCTGCTGGCCCGCTGGGGCCGAG
CCTGGGGGCAAATACAGACCACTTCTGCAAATGAGAATAGCACTGTTTTGCCTTCATCCACCAGCTCCAG
CTCCGATGGCAACCTGCGTCCAGAAGCCATCACTGCTATCATCGTGGTCTTCTCCCTCTTGGCTGCCTTG
CTCCTGGCTGTGGGGCTGGCACTGTTGGTGCGGAAGCTTCGGGAGAAGCGGCAGACGGAGGGCACCTACC
GGCCCAGTAGCGAGGAGCAGGTGGGTGCCCGCGTGCCACCGACCCCCAACCTCAAGTTGCCGCCGGAAGA
GCGGCTCATCTGA

Translation (120 aa):
MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAAL
LLAVGLALLVRKLREKRQTEGTYRPSSEEQVGARVPPTPNLKLPPEERLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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